HL_3JBU_086

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

3JBU|1|b|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBU_086 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.182

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

3JBU|1|b|C|2248
3JBU|1|b|U|2249
3JBU|1|b|G|2250
3JBU|1|b|G|2251
3JBU|1|b|G|2252
3JBU|1|b|G|2253
3JBU|1|b|C|2254
3JBU|1|b|G|2255
3JBU|1|b|G|2256

Current chains

Chain b

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L16

Chain v

Transfer RNA; tRNA

Chain y

50S ribosomal protein L27