HL_3JBU_088

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBU_088 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.3443

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

3JBU|1|b|G|2303
3JBU|1|b|G|2304
3JBU|1|b|U|2305
3JBU|1|b|C|2306
3JBU|1|b|G|2307
3JBU|1|b|G|2308
3JBU|1|b|A|2309
3JBU|1|b|C|2310
3JBU|1|b|A|2311
3JBU|1|b|U|2312
3JBU|1|b|C|2313

Current chains

Chain b

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L5