HL_3JBU_115

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

AUUAACUGAAUCCAUAGGUUAAU

Length

23 nucleotides

Bulged bases

3JBU|1|b|C|163

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBU_115 not in the Motif Atlas

Homologous match to HL_4WF9_005

Geometric discrepancy: 0.5718

The information below is about HL_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBU|1|b|A|152
3JBU|1|b|U|153
3JBU|1|b|U|154
3JBU|1|b|A|155
3JBU|1|b|A|156
3JBU|1|b|C|157
3JBU|1|b|U|158
3JBU|1|b|G|159
3JBU|1|b|A|160
3JBU|1|b|A|161
3JBU|1|b|U|162
3JBU|1|b|C|163
3JBU|1|b|C|164
3JBU|1|b|A|165
3JBU|1|b|U|166
3JBU|1|b|A|167
3JBU|1|b|G|168
3JBU|1|b|G|169
3JBU|1|b|U|170
3JBU|1|b|U|171
3JBU|1|b|A|172
3JBU|1|b|A|173
3JBU|1|b|U|174

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain h

50S ribosomal protein L9