HL_3JBU_122

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

UGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCA

Length

55 nucleotides

Bulged bases

3JBU|1|b|G|2123, 3JBU|1|b|G|2124, 3JBU|1|b|G|2125, 3JBU|1|b|A|2126, 3JBU|1|b|U|2130, 3JBU|1|b|U|2131, 3JBU|1|b|U|2132, 3JBU|1|b|G|2140, 3JBU|1|b|C|2145, 3JBU|1|b|C|2146, 3JBU|1|b|A|2147, 3JBU|1|b|G|2157, 3JBU|1|b|A|2158, 3JBU|1|b|G|2162, 3JBU|1|b|A|2163, 3JBU|1|b|C|2164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBU|1|b|U|2122
3JBU|1|b|G|2123
3JBU|1|b|G|2124
3JBU|1|b|G|2125
3JBU|1|b|A|2126
3JBU|1|b|G|2127
3JBU|1|b|G|2128
3JBU|1|b|C|2129
3JBU|1|b|U|2130
3JBU|1|b|U|2131
3JBU|1|b|U|2132
3JBU|1|b|G|2133
3JBU|1|b|A|2134
3JBU|1|b|A|2135
3JBU|1|b|G|2136
3JBU|1|b|U|2137
3JBU|1|b|G|2138
3JBU|1|b|U|2139
3JBU|1|b|G|2140
3JBU|1|b|G|2141
3JBU|1|b|A|2142
3JBU|1|b|C|2143
3JBU|1|b|G|2144
3JBU|1|b|C|2145
3JBU|1|b|C|2146
3JBU|1|b|A|2147
3JBU|1|b|G|2148
3JBU|1|b|U|2149
3JBU|1|b|C|2150
3JBU|1|b|U|2151
3JBU|1|b|G|2152
3JBU|1|b|C|2153
3JBU|1|b|A|2154
3JBU|1|b|U|2155
3JBU|1|b|G|2156
3JBU|1|b|G|2157
3JBU|1|b|A|2158
3JBU|1|b|G|2159
3JBU|1|b|C|2160
3JBU|1|b|C|2161
3JBU|1|b|G|2162
3JBU|1|b|A|2163
3JBU|1|b|C|2164
3JBU|1|b|C|2165
3JBU|1|b|U|2166
3JBU|1|b|U|2167
3JBU|1|b|G|2168
3JBU|1|b|A|2169
3JBU|1|b|A|2170
3JBU|1|b|A|2171
3JBU|1|b|U|2172
3JBU|1|b|A|2173
3JBU|1|b|C|2174
3JBU|1|b|C|2175
3JBU|1|b|A|2176

Current chains

Chain b

23S rRNA

Nearby chains