HL_3JBV_004

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GUCGCAAGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_004 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.3242

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

3JBV|1|A|G|184
3JBV|1|A|U|185
3JBV|1|A|C|186
3JBV|1|A|G|187
3JBV|1|A|C|188
3JBV|1|A|A|189
3JBV|1|A|A|190
3JBV|1|A|G|191
3JBV|1|A|A|192
3JBV|1|A|C|193

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain T

30S ribosomal protein S20