3JBV Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3JBV_001 | 1/A/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_3JBV_108 | 1/A/75:95 | No text annotation | ||
| HL_3JBV_002 | 1/A/81:89 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 | |
| HL_3JBV_003 | 1/A/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.8 | |
| HL_3JBV_004 | 1/A/184:193 | No text annotation | geometric HL_7A0S_011 HL_75660.5 | |
| HL_3JBV_005 | 1/A/207:212 | UNCG | homologous HL_5J7L_005 HL_34617.5 | |
| HL_3JBV_006 | 1/A/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_3JBV_007 | 1/A/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.8 | |
| HL_3JBV_008 | 1/A/322:332 | No text annotation | ||
| HL_3JBV_009 | 1/A/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_3JBV_010 | 1/A/379:384 | GNRA | homologous HL_6CZR_081 NA | |
| HL_3JBV_011 | 1/A/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_3JBV_012 | 1/A/462:470 | No text annotation | ||
| HL_3JBV_013 | 1/A/522:527 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_3JBV_014 | 1/A/616:624 | tRNA D-loop | geometric HL_4V9K_033 HL_48417.6 | |
| HL_3JBV_015 | 1/A/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_3JBV_016 | 1/A/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.8 | |
| HL_3JBV_017 | 1/A/786:796 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_3JBV_018 | 1/A/839:847 | No text annotation | geometric HL_4WF9_011 HL_75660.5 | |
| HL_3JBV_019 | 1/A/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.8 | |
| HL_3JBV_020 | 1/A/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
| HL_3JBV_021 | 1/A/963:972 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_3JBV_022 | 1/A/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_3JBV_023 | 1/A/1028:1033 | UNCG variation | geometric HL_1P6V_001 HL_53890.2 | |
| HL_3JBV_024 | 1/A/1076:1081 | GNRA | homologous HL_4LFB_024 HL_37824.8 | |
| HL_3JBV_025 | 1/A/1089:1096 | T-loop related | homologous HL_5J7L_024 HL_77436.5 | |
| HL_3JBV_129 | 1/A/1134:1140 | No text annotation | homologous HL_5J7L_025 HL_87954.2 | |
| HL_3JBV_027 | 1/A/1165:1171 | GNRA | homologous HL_5J7L_026 HL_93535.1 | |
| HL_3JBV_028 | 1/A/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.8 | |
| HL_3JBV_029 | 1/A/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
| HL_3JBV_030 | 1/A/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_3JBV_031 | 1/A/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_3JBV_032 | 1/A/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_3JBV_033 | 1/V/13:22 | No text annotation | homologous HL_6ORD_035 NA | |
| HL_3JBV_034 | 1/V/29:41 | No text annotation | homologous HL_6GSL_221 NA | |
| HL_3JBV_035 | 1/V/53:61 | No text annotation | homologous HL_6GSL_222 NA | |
| HL_3JBV_036 | 1/W/12:23 | tRNA D-loop | homologous HL_3TUP_001 HL_45175.1 | |
| HL_3JBV_037 | 1/W/31:39 | tRNA anticodon loop | homologous HL_6UFM_002 HL_06059.7 | |
| HL_3JBV_038 | 1/a/38:44 | No text annotation | geometric HL_1MJI_002 HL_47787.2 | |
| HL_3JBV_039 | 1/a/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 | |
| HL_3JBV_040 | 1/b/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
| HL_3JBV_041 | 1/b/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_3JBV_042 | 1/b/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_3JBV_115 | 1/b/135:144 | No text annotation | ||
| HL_3JBV_043 | 1/b/137:142 | No text annotation | ||
| HL_3JBV_116 | 1/b/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_3JBV_045 | 1/b/194:201 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
| HL_3JBV_046 | 1/b/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_3JBV_047 | 1/b/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
| HL_3JBV_048 | 1/b/305:312 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_01609.3 | |
| HL_3JBV_049 | 1/b/319:323 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
| HL_3JBV_050 | 1/b/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_3JBV_051 | 1/b/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_3JBV_117 | 1/b/409:418 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_3JBV_052 | 1/b/410:417 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.3 | |
| HL_3JBV_053 | 1/b/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_3JBV_054 | 1/b/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.8 | |
| HL_3JBV_055 | 1/b/543:550 | No text annotation | ||
| HL_3JBV_118 | 1/b/564:577 | No text annotation | ||
| HL_3JBV_056 | 1/b/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 HL_28252.9 | |
| HL_3JBV_057 | 1/b/611:617 | No text annotation | ||
| HL_3JBV_058 | 1/b/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.8 | |
| HL_3JBV_059 | 1/b/641:647 | GNRA | homologous HL_4WF9_021 HL_37824.8 | |
| HL_3JBV_060 | 1/b/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_3JBV_061 | 1/b/744:753 | No text annotation | homologous HL_7A0S_022 HL_88205.2 | |
| HL_3JBV_062 | 1/b/779:785 | No text annotation | homologous HL_7RQB_024 NA | |
| HL_3JBV_063 | 1/b/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_3JBV_064 | 1/b/883:893 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_3JBV_065 | 1/b/955:962 | GNRA | homologous HL_4WF9_027 HL_37824.8 | |
| HL_3JBV_066 | 1/b/978:985 | No text annotation | homologous HL_7A0S_027 HL_42998.2 | |
| HL_3JBV_067 | 1/b/1064:1074 | No text annotation | ||
| HL_3JBV_068 | 1/b/1092:1099 | No text annotation | geometric HL_4WF9_011 HL_75660.5 | |
| HL_3JBV_130 | 1/b/1165:1184 | No text annotation | ||
| HL_3JBV_069 | 1/b/1168:1181 | No text annotation | ||
| HL_3JBV_070 | 1/b/1222:1227 | GNRA | homologous HL_7A0S_031 HL_37824.8 | |
| HL_3JBV_071 | 1/b/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.9 | |
| HL_3JBV_072 | 1/b/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_3JBV_073 | 1/b/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.8 | |
| HL_3JBV_074 | 1/b/1388:1399 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_3JBV_075 | 1/b/1450:1461 | No text annotation | ||
| HL_3JBV_076 | 1/b/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_3JBV_123 | 1/b/1529:1542 | No text annotation | geometric HL_6D12_002 HL_48417.6 | |
| HL_3JBV_077 | 1/b/1531:1540 | No text annotation | ||
| HL_3JBV_078 | 1/b/1565:1568 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
| HL_3JBV_079 | 1/b/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_3JBV_124 | 1/b/1627:1639 | No text annotation | geometric HL_5TBW_226 NA | |
| HL_3JBV_080 | 1/b/1629:1637 | GNRA with extra cWW | homologous HL_4WF9_039 HL_20167.2 | |
| HL_3JBV_081 | 1/b/1691:1696 | UNCG | homologous HL_5J7L_175 HL_34617.5 | |
| HL_3JBV_082 | 1/b/1727:1733 | No text annotation | ||
| HL_3JBV_083 | 1/b/1752:1756 | No text annotation | homologous HL_7A0S_044 HL_80709.3 | |
| HL_3JBV_084 | 1/b/1777:1787 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
| HL_3JBV_085 | 1/b/1804:1813 | No text annotation | ||
| HL_3JBV_086 | 1/b/1868:1873 | GNRA | geometric HL_5J7L_007 HL_37824.8 | |
| HL_3JBV_087 | 1/b/1910:1920 | No text annotation | homologous HL_9DFE_046 HL_25847.2 | |
| HL_3JBV_088 | 1/b/1949:1957 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
| HL_3JBV_089 | 1/b/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_61996.3 | |
| HL_3JBV_126 | 1/b/2128:2160 | No text annotation | ||
| HL_3JBV_091 | 1/b/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_3JBV_092 | 1/b/2248:2256 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
| HL_3JBV_093 | 1/b/2264:2276 | No text annotation | homologous HL_5J7L_187 HL_91939.2 | |
| HL_3JBV_131 | 1/b/2304:2312 | No text annotation | homologous HL_9DFE_198 HL_50860.2 | |
| HL_3JBV_095 | 1/b/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.8 | |
| HL_3JBV_096 | 1/b/2374:2379 | GNRA | homologous HL_5J7L_191 HL_37824.8 | |
| HL_3JBV_097 | 1/b/2404:2413 | No text annotation | homologous HL_5J7L_192 HL_53454.2 | |
| HL_3JBV_098 | 1/b/2471:2479 | No text annotation | homologous HL_7A0S_059 HL_32735.2 | |
| HL_3JBV_099 | 1/b/2525:2538 | No text annotation | ||
| HL_3JBV_100 | 1/b/2551:2557 | No text annotation | geometric HL_4WF9_058 HL_30068.2 | |
| HL_3JBV_101 | 1/b/2594:2599 | GNRA | homologous HL_5J7L_196 HL_37824.8 | |
| HL_3JBV_102 | 1/b/2658:2663 | GNRA | geometric HL_4R4V_004 HL_37824.8 | |
| HL_3JBV_128 | 1/b/2694:2715 | No text annotation | ||
| HL_3JBV_103 | 1/b/2698:2709 | No text annotation | ||
| HL_3JBV_104 | 1/b/2745:2759 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
| HL_3JBV_105 | 1/b/2796:2799 | No text annotation | geometric HL_8Y03_001 HL_69752.2 | |
| HL_3JBV_106 | 1/b/2818:2828 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_3JBV_107 | 1/b/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3JBV_109 | GNRA with extra near cWW | ||
| HL_3JBV_110 | No text annotation | ||
| HL_3JBV_111 | No text annotation | ||
| HL_3JBV_026 | No text annotation | ||
| HL_3JBV_112 | No text annotation | ||
| HL_3JBV_113 | T-loop | ||
| HL_3JBV_114 | No text annotation | ||
| HL_3JBV_044 | No text annotation | ||
| HL_3JBV_119 | No text annotation | ||
| HL_3JBV_120 | No text annotation | ||
| HL_3JBV_121 | No text annotation | ||
| HL_3JBV_122 | No text annotation | ||
| HL_3JBV_125 | No text annotation | ||
| HL_3JBV_090 | No text annotation | ||
| HL_3JBV_094 | No text annotation | ||
| HL_3JBV_127 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3JBV_001 | 1/A/30:32, 1/A/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.14 | |
| IL_3JBV_218 | 1/A/44:45, 1/A/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.7 | |
| IL_3JBV_003 | 1/A/47:52, 1/A/359:361 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
| IL_3JBV_004 | 1/A/54:56, 1/A/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_3JBV_005 | 1/A/63:66, 1/A/103:104 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_3JBV_006 | 1/A/67:69, 1/A/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
| IL_3JBV_219 | 1/A/67:73, 1/A/97:102 | No text annotation | ||
| IL_3JBV_007 | 1/A/69:74, 1/A/96:99 | No text annotation | ||
| IL_3JBV_008 | 1/A/75:81, 1/A/89:95 | No text annotation | ||
| IL_3JBV_171 | 1/A/128:131, 1/A/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_3JBV_010 | 1/A/132:136, 1/A/227:230 | No text annotation | ||
| IL_3JBV_011 | 1/A/144:147, 1/A/175:178 | Tandem non-canonical cWW pairs | geometric IL_4EYA_008 IL_51479.1 | |
| IL_3JBV_012 | 1/A/147:154, 1/A/167:175 | No text annotation | ||
| IL_3JBV_013 | 1/A/242:247, 1/A/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_3JBV_014 | 1/A/249:253, 1/A/273:275 | No text annotation | homologous IL_6CZR_124 NA | |
| IL_3JBV_220 | 1/A/249:256, 1/A/270:275 | No text annotation | ||
| IL_3JBV_015 | 1/A/292:293, 1/A/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_3JBV_221 | 1/A/319:321, 1/A/333:334 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_3JBV_016 | 1/A/320:322, 1/A/332:333 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_3JBV_222 | 1/A/367:378, 1/A/385:393 | No text annotation | ||
| IL_3JBV_174 | 1/A/409:416, 1/A/427:433 | No text annotation | homologous IL_5J7L_020 IL_28026.3 | |
| IL_3JBV_018 | 1/A/440:442, 1/A/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_3JBV_019 | 1/A/446:450, 1/A/483:488 | tSH-tHW-tWW | geometric IL_5J7L_022 IL_88269.4 | |
| IL_3JBV_175 | 1/A/446:454, 1/A/479:488 | No text annotation | ||
| IL_3JBV_020 | 1/A/450:454, 1/A/479:483 | No text annotation | ||
| IL_3JBV_021 | 1/A/454:462, 1/A/470:479 | No text annotation | ||
| IL_3JBV_022 | 1/A/504:511, 1/A/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_3JBV_023 | 1/A/515:521, 1/A/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_3JBV_024 | 1/A/569:575, 1/A/880:881 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_3JBV_025 | 1/A/580:584, 1/A/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_3JBV_026 | 1/A/594:596, 1/A/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_3JBV_027 | 1/A/597:598, 1/A/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_3JBV_177 | 1/A/605:612, 1/A/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_3JBV_029 | 1/A/654:655, 1/A/751:754 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_50694.7 | |
| IL_3JBV_030 | 1/A/659:660, 1/A/745:747 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_3JBV_031 | 1/A/662:666, 1/A/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_3JBV_179 | 1/A/673:677, 1/A/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_3JBV_033 | 1/A/684:688, 1/A/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_3JBV_034 | 1/A/774:778, 1/A/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_3JBV_035 | 1/A/779:783, 1/A/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_3JBV_036 | 1/A/887:894, 1/A/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_3JBV_037 | 1/A/922:923, 1/A/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.7 | |
| IL_3JBV_223 | 1/A/925:927, 1/A/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.14 | |
| IL_3JBV_039 | 1/A/933:935, 1/A/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_3JBV_040 | 1/A/953:954, 1/A/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
| IL_3JBV_041 | 1/A/993:997, 1/A/1044:1045 | Minor groove platform | geometric IL_5J7L_043 IL_47078.3 | |
| IL_3JBV_181 | 1/A/998:999, 1/A/1041:1043 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_3JBV_043 | 1/A/1001:1002, 1/A/1037:1039 | Single stack bend | homologous IL_4LFB_041 IL_90729.1 | |
| IL_3JBV_044 | 1/A/1048:1050, 1/A/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_3JBV_224 | 1/A/1048:1056, 1/A/1204:1209 | No text annotation | ||
| IL_3JBV_045 | 1/A/1052:1056, 1/A/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_3JBV_046 | 1/A/1057:1058, 1/A/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_3JBV_047 | 1/A/1060:1061, 1/A/1195:1197 | Single bulged U | homologous IL_4LFB_046 IL_89505.4 | |
| IL_3JBV_185 | 1/A/1060:1063, 1/A/1193:1197 | Tandem non-canonical cWW pairs | geometric IL_1L9A_005 IL_85033.2 | |
| IL_3JBV_048 | 1/A/1061:1063, 1/A/1193:1195 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 IL_28037.2 | |
| IL_3JBV_049 | 1/A/1124:1128, 1/A/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_3JBV_050 | 1/A/1129:1132, 1/A/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_3JBV_051 | 1/A/1158:1161, 1/A/1175:1181 | No text annotation | homologous IL_5J7L_053 IL_42032.1 | |
| IL_3JBV_225 | 1/A/1247:1253, 1/A/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_3JBV_052 | 1/A/1255:1258, 1/A/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_3JBV_053 | 1/A/1259:1263, 1/A/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 IL_17948.2 | |
| IL_3JBV_054 | 1/A/1399:1401, 1/A/1501:1504 | No text annotation | geometric IL_5J7L_058 IL_61438.4 | |
| IL_3JBV_055 | 1/A/1401:1404, 1/A/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_3JBV_056 | 1/A/1405:1407, 1/A/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_3JBV_057 | 1/A/1407:1409, 1/A/1491:1494 | Decoding loop related | geometric IL_2O3X_003 IL_31737.3 | |
| IL_3JBV_058 | 1/A/1412:1414, 1/A/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_3JBV_059 | 1/A/1416:1419, 1/A/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_3JBV_226 | 1/A/1430:1435, 1/A/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_3JBV_227 | 1/A/1440:1442, 1/A/1460:1461 | Single bulged A | homologous IL_5J7L_064 IL_31462.7 | |
| IL_3JBV_062 | 1/A/1445:1448, 1/A/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 | |
| IL_3JBV_228 | 1/a/17:18, 1/a/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.7 | |
| IL_3JBV_064 | 1/a/23:28, 1/a/56:60 | No text annotation | homologous IL_7A0S_103 IL_18472.4 | |
| IL_3JBV_065 | 1/a/30:31, 1/a/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 IL_68140.4 | |
| IL_3JBV_066 | 1/a/32:38, 1/a/44:50 | No text annotation | ||
| IL_3JBV_067 | 1/a/71:79, 1/a/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 | |
| IL_3JBV_068 | 1/b/24:30, 1/b/510:516 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 IL_04021.2 | |
| IL_3JBV_069 | 1/b/36:37, 1/b/442:444 | Single bulged A | homologous IL_7A0S_002 IL_31462.7 | |
| IL_3JBV_190 | 1/b/38:44, 1/b/434:441 | No text annotation | ||
| IL_3JBV_070 | 1/b/43:44, 1/b/434:436 | Minor groove platform | geometric IL_5J7L_247 IL_51454.3 | |
| IL_3JBV_071 | 1/b/81:85, 1/b/97:105 | No text annotation | homologous IL_5J7L_248 IL_37015.1 | |
| IL_3JBV_072 | 1/b/183:184, 1/b/212:214 | Single stack bend | homologous IL_5J7L_249 IL_90729.1 | |
| IL_3JBV_073 | 1/b/188:194, 1/b/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_250 IL_04346.10 | |
| IL_3JBV_074 | 1/b/239:245, 1/b/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_3JBV_075 | 1/b/269:271, 1/b/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_3JBV_076 | 1/b/274:281, 1/b/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_3JBV_077 | 1/b/293:295, 1/b/343:347 | No text annotation | geometric IL_4WF9_014 IL_69440.3 | |
| IL_3JBV_078 | 1/b/481:484, 1/b/496:509 | No text annotation | homologous IL_4WF9_015 IL_81516.2 | |
| IL_3JBV_079 | 1/b/536:539, 1/b/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_3JBV_080 | 1/b/564:566, 1/b/575:577 | Isolated non-canonical cWW pair | geometric IL_7A0S_011 IL_07785.1 | |
| IL_3JBV_081 | 1/b/606:610, 1/b/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_3JBV_082 | 1/b/672:678, 1/b/799:808 | No text annotation | ||
| IL_3JBV_083 | 1/b/697:698, 1/b/763:765 | Single bulged A | geometric IL_5J7L_261 IL_31462.7 | |
| IL_3JBV_084 | 1/b/702:703, 1/b/728:730 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_3JBV_191 | 1/b/702:707, 1/b/724:730 | Quadruple sheared | geometric IL_3FTF_001 IL_06136.2 | |
| IL_3JBV_085 | 1/b/703:707, 1/b/724:728 | Triple sheared | geometric IL_5J7L_263 IL_50730.2 | |
| IL_3JBV_086 | 1/b/738:740, 1/b/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
| IL_3JBV_087 | 1/b/775:777, 1/b/787:791 | Multiple bulged bases | homologous IL_5J7L_265 IL_06549.2 | |
| IL_3JBV_192 | 1/b/841:853, 1/b/924:937 | No text annotation | ||
| IL_3JBV_088 | 1/b/842:845, 1/b/932:936 | No text annotation | ||
| IL_3JBV_089 | 1/b/845:851, 1/b/926:932 | No text annotation | ||
| IL_3JBV_090 | 1/b/856:862, 1/b/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 IL_29198.2 | |
| IL_3JBV_091 | 1/b/862:863, 1/b/913:915 | Single bulged G | geometric IL_5J7L_271 IL_00225.14 | |
| IL_3JBV_092 | 1/b/864:868, 1/b/909:912 | C-loop | homologous IL_7A0S_029 IL_26222.2 | |
| IL_3JBV_093 | 1/b/870:872, 1/b/905:907 | Isolated non-canonical cWW pair | geometric IL_5J7L_273 IL_28037.2 | |
| IL_3JBV_229 | 1/b/874:883, 1/b/893:903 | No text annotation | ||
| IL_3JBV_094 | 1/b/875:881, 1/b/895:902 | No text annotation | ||
| IL_3JBV_095 | 1/b/994:996, 1/b/1159:1160 | No text annotation | ||
| IL_3JBV_195 | 1/b/994:1002, 1/b/1153:1160 | No text annotation | ||
| IL_3JBV_096 | 1/b/998:1002, 1/b/1153:1157 | No text annotation | ||
| IL_3JBV_230 | 1/b/1003:1014, 1/b/1148:1152 | No text annotation | ||
| IL_3JBV_097 | 1/b/1004:1011, 1/b/1150:1151 | No text annotation | ||
| IL_3JBV_098 | 1/b/1011:1013, 1/b/1149:1150 | No text annotation | ||
| IL_3JBV_099 | 1/b/1017:1024, 1/b/1140:1145 | No text annotation | ||
| IL_3JBV_100 | 1/b/1024:1030, 1/b/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_3JBV_101 | 1/b/1031:1034, 1/b/1121:1123 | No text annotation | ||
| IL_3JBV_231 | 1/b/1031:1036, 1/b/1119:1123 | Partly complementary | geometric IL_6CZR_167 NA | |
| IL_3JBV_102 | 1/b/1038:1041, 1/b/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_3JBV_232 | 1/b/1043:1052, 1/b/1107:1112 | No text annotation | ||
| IL_3JBV_104 | 1/b/1196:1198, 1/b/1247:1250 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.3 | |
| IL_3JBV_233 | 1/b/1200:1207, 1/b/1239:1245 | No text annotation | ||
| IL_3JBV_105 | 1/b/1201:1207, 1/b/1239:1244 | No text annotation | ||
| IL_3JBV_106 | 1/b/1208:1215, 1/b/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_3JBV_107 | 1/b/1262:1269, 1/b/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_3JBV_108 | 1/b/1310:1313, 1/b/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_3JBV_109 | 1/b/1319:1323, 1/b/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_3JBV_110 | 1/b/1351:1355, 1/b/1376:1380 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
| IL_3JBV_199 | 1/b/1351:1361, 1/b/1370:1380 | No text annotation | ||
| IL_3JBV_111 | 1/b/1355:1361, 1/b/1370:1376 | No text annotation | ||
| IL_3JBV_234 | 1/b/1407:1417, 1/b/1581:1595 | No text annotation | ||
| IL_3JBV_112 | 1/b/1413:1416, 1/b/1582:1589 | No text annotation | ||
| IL_3JBV_113 | 1/b/1417:1421, 1/b/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_3JBV_114 | 1/b/1432:1435, 1/b/1557:1561 | No text annotation | ||
| IL_3JBV_115 | 1/b/1437:1440, 1/b/1551:1555 | tSH-tHW | homologous IL_5J7L_297 IL_99646.2 | |
| IL_3JBV_116 | 1/b/1468:1471, 1/b/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_3JBV_202 | 1/b/1468:1479, 1/b/1512:1524 | No text annotation | ||
| IL_3JBV_117 | 1/b/1472:1479, 1/b/1512:1519 | No text annotation | ||
| IL_3JBV_203 | 1/b/1481:1482, 1/b/1507:1510 | No text annotation | ||
| IL_3JBV_119 | 1/b/1484:1491, 1/b/1499:1505 | No text annotation | ||
| IL_3JBV_120 | 1/b/1526:1529, 1/b/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_3JBV_121 | 1/b/1651:1656, 1/b/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_3JBV_122 | 1/b/1660:1665, 1/b/1995:2000 | No text annotation | ||
| IL_3JBV_123 | 1/b/1666:1669, 1/b/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7A0S_061 IL_50694.7 | |
| IL_3JBV_204 | 1/b/1666:1674, 1/b/1990:1994 | No text annotation | homologous IL_5J7L_386 IL_22854.4 | |
| IL_3JBV_124 | 1/b/1669:1674, 1/b/1990:1993 | Intercalated tWH | geometric IL_7A0S_062 IL_76758.2 | |
| IL_3JBV_125 | 1/b/1686:1691, 1/b/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_47346.2 | |
| IL_3JBV_126 | 1/b/1712:1718, 1/b/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_3JBV_127 | 1/b/1720:1724, 1/b/1736:1740 | Triple sheared | homologous IL_5J7L_310 IL_50730.2 | |
| IL_3JBV_128 | 1/b/1769:1771, 1/b/1980:1983 | No text annotation | ||
| IL_3JBV_129 | 1/b/1798:1804, 1/b/1813:1821 | Kink-turn related | geometric IL_5J7L_313 IL_17069.5 | |
| IL_3JBV_130 | 1/b/1837:1841, 1/b/1901:1903 | No text annotation | ||
| IL_3JBV_205 | 1/b/1837:1842, 1/b/1898:1903 | No text annotation | ||
| IL_3JBV_131 | 1/b/1841:1842, 1/b/1898:1901 | No text annotation | ||
| IL_3JBV_206 | 1/b/1846:1860, 1/b/1882:1894 | No text annotation | ||
| IL_3JBV_132 | 1/b/1864:1867, 1/b/1874:1878 | UAA/GAN related | geometric IL_5J7L_317 IL_77691.5 | |
| IL_3JBV_133 | 1/b/1933:1934, 1/b/1964:1967 | Bulged stacked bases | homologous IL_5J7L_318 IL_22551.4 | |
| IL_3JBV_134 | 1/b/1934:1946, 1/b/1960:1964 | No text annotation | ||
| IL_3JBV_208 | 1/b/1934:1947, 1/b/1959:1964 | No text annotation | ||
| IL_3JBV_135 | 1/b/2050:2052, 1/b/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_3JBV_209 | 1/b/2053:2056, 1/b/2612:2616 | No text annotation | ||
| IL_3JBV_136 | 1/b/2054:2056, 1/b/2612:2615 | No text annotation | ||
| IL_3JBV_137 | 1/b/2067:2069, 1/b/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_3JBV_138 | 1/b/2070:2071, 1/b/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_3JBV_139 | 1/b/2081:2083, 1/b/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.2 | |
| IL_3JBV_140 | 1/b/2085:2087, 1/b/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 IL_28037.2 | |
| IL_3JBV_210 | 1/b/2101:2127, 1/b/2161:2188 | No text annotation | ||
| IL_3JBV_141 | 1/b/2102:2108, 1/b/2181:2187 | No text annotation | ||
| IL_3JBV_142 | 1/b/2108:2110, 1/b/2179:2181 | Isolated non-canonical cWW pair | homologous IL_3U4M_001 IL_28037.2 | |
| IL_3JBV_143 | 1/b/2202:2204, 1/b/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_3JBV_211 | 1/b/2283:2297, 1/b/2321:2325 | No text annotation | ||
| IL_3JBV_235 | 1/b/2283:2301, 1/b/2315:2325 | No text annotation | ||
| IL_3JBV_144 | 1/b/2297:2299, 1/b/2317:2321 | No text annotation | ||
| IL_3JBV_236 | 1/b/2297:2301, 1/b/2315:2321 | No text annotation | ||
| IL_3JBV_145 | 1/b/2326:2328, 1/b/2387:2389 | No text annotation | ||
| IL_3JBV_146 | 1/b/2350:2353, 1/b/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_3JBV_147 | 1/b/2401:2403, 1/b/2414:2415 | Major groove platform | homologous IL_7RQB_090 NA | |
| IL_3JBV_148 | 1/b/2454:2455, 1/b/2496:2498 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_3JBV_149 | 1/b/2457:2459, 1/b/2493:2494 | Major groove platform | homologous IL_4WF9_091 IL_48076.6 | |
| IL_3JBV_214 | 1/b/2457:2461, 1/b/2489:2494 | No text annotation | ||
| IL_3JBV_150 | 1/b/2459:2461, 1/b/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 IL_51387.3 | |
| IL_3JBV_151 | 1/b/2466:2470, 1/b/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 IL_17948.2 | |
| IL_3JBV_152 | 1/b/2507:2508, 1/b/2580:2582 | Major groove platform | homologous IL_7A0S_088 IL_07039.3 | |
| IL_3JBV_237 | 1/b/2509:2512, 1/b/2574:2579 | Tandem non-canonical cWW pairs | geometric IL_5EW4_001 IL_43644.1 | |
| IL_3JBV_153 | 1/b/2510:2512, 1/b/2574:2578 | No text annotation | ||
| IL_3JBV_154 | 1/b/2512:2513, 1/b/2571:2574 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_3JBV_155 | 1/b/2520:2523, 1/b/2540:2545 | No text annotation | ||
| IL_3JBV_238 | 1/b/2589:2592, 1/b/2601:2605 | No text annotation | homologous IL_5J7L_343 NA | |
| IL_3JBV_157 | 1/b/2636:2640, 1/b/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
| IL_3JBV_158 | 1/b/2652:2658, 1/b/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.4 | |
| IL_3JBV_159 | 1/b/2680:2684, 1/b/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_3JBV_160 | 1/b/2687:2691, 1/b/2718:2722 | UAA/GAN related, with intercalation | geometric IL_4WF9_102 IL_23774.1 | |
| IL_3JBV_161 | 1/b/2695:2696, 1/b/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
| IL_3JBV_162 | 1/b/2737:2742, 1/b/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_3JBV_163 | 1/b/2795:2796, 1/b/2799:2801 | Single stack bend with SAM intercalation | geometric IL_6FZ0_001 IL_90729.1 | |
| IL_3JBV_164 | 1/b/2806:2811, 1/b/2889:2892 | No text annotation | homologous IL_5J7L_351 IL_29471.1 | |
| IL_3JBV_165 | 1/b/2838:2840, 1/b/2877:2880 | No text annotation | ||
| IL_3JBV_217 | 1/b/2838:2841, 1/b/2876:2880 | Tandem non-canonical cWW pairs | geometric IL_1GID_008 NA | |
| IL_3JBV_166 | 1/b/2843:2846, 1/b/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_3JBV_167 | 1/b/2847:2852, 1/b/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3JBV_168 | Tandem non-canonical cWW pairs | ||
| IL_3JBV_002 | Isolated non-canonical cWW pair | ||
| IL_3JBV_169 | No text annotation | ||
| IL_3JBV_170 | No text annotation | ||
| IL_3JBV_009 | No text annotation | ||
| IL_3JBV_172 | No text annotation | ||
| IL_3JBV_173 | No text annotation | ||
| IL_3JBV_017 | No text annotation | ||
| IL_3JBV_176 | No text annotation | ||
| IL_3JBV_028 | No text annotation | ||
| IL_3JBV_178 | No text annotation | ||
| IL_3JBV_032 | No text annotation | ||
| IL_3JBV_038 | Isolated non-canonical cWW pair | ||
| IL_3JBV_180 | No text annotation | ||
| IL_3JBV_042 | Other IL | ||
| IL_3JBV_182 | No text annotation | ||
| IL_3JBV_183 | No text annotation | ||
| IL_3JBV_184 | Minor groove platform related | ||
| IL_3JBV_186 | No text annotation | ||
| IL_3JBV_187 | No text annotation | ||
| IL_3JBV_060 | No text annotation | ||
| IL_3JBV_061 | Major groove platform with extra cWW | ||
| IL_3JBV_188 | No text annotation | ||
| IL_3JBV_189 | Major groove platform with intercalation | ||
| IL_3JBV_063 | Isolated non-canonical cWW pair | ||
| IL_3JBV_193 | Tandem non-canonical cWW pairs | ||
| IL_3JBV_194 | No text annotation | ||
| IL_3JBV_196 | No text annotation | ||
| IL_3JBV_197 | No text annotation | ||
| IL_3JBV_103 | No text annotation | ||
| IL_3JBV_198 | No text annotation | ||
| IL_3JBV_200 | No text annotation | ||
| IL_3JBV_201 | No text annotation | ||
| IL_3JBV_118 | No text annotation | ||
| IL_3JBV_207 | No text annotation | ||
| IL_3JBV_212 | No text annotation | ||
| IL_3JBV_213 | No text annotation | ||
| IL_3JBV_215 | No text annotation | ||
| IL_3JBV_156 | Triple non-canonical cWW pairs | ||
| IL_3JBV_216 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3JBV_022 | 1/A/46:47, 1/A/361:367, 1/A/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_3JBV_023 | 1/A/142:147, 1/A/175:184, 1/A/193:221 | No text annotation | ||
| J3_3JBV_045 | 1/A/586:588, 1/A/651:654, 1/A/754:755 | No text annotation | geometric J3_4LFB_011 J3_56052.5 | |
| J3_3JBV_046 | 1/A/586:588, 1/A/651:655, 1/A/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_3JBV_003 | 1/A/672:673, 1/A/717:725, 1/A/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_3JBV_004 | 1/A/826:829, 1/A/857:861, 1/A/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_3JBV_047 | 1/A/936:939, 1/A/1344:1350, 1/A/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_3JBV_005 | 1/A/943:946, 1/A/1235:1237, 1/A/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_3JBV_027 | 1/A/955:962, 1/A/973:984, 1/A/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
| J3_3JBV_007 | 1/A/990:993, 1/A/1045:1047, 1/A/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_3JBV_028 | 1/A/990:997, 1/A/1044:1047, 1/A/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_3JBV_048 | 1/A/1002:1008, 1/A/1021:1028, 1/A/1033:1038 | No text annotation | ||
| J3_3JBV_008 | 1/A/1063:1068, 1/A/1107:1113, 1/A/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_3JBV_049 | 1/A/1073:1074, 1/A/1083:1086, 1/A/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_3JBV_010 | 1/A/1116:1118, 1/A/1155:1158, 1/A/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_3JBV_030 | 1/A/1116:1118, 1/A/1155:1161, 1/A/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_3JBV_050 | 1/A/1237:1241, 1/A/1296:1308, 1/A/1329:1337 | No text annotation | ||
| J3_3JBV_011 | 1/a/10:16, 1/a/68:70, 1/a/106:110 | No text annotation | geometric J3_5J7L_049 J3_89095.1 | |
| J3_3JBV_012 | 1/b/30:31, 1/b/474:481, 1/b/509:510 | No text annotation | homologous J3_5J7L_036 J3_60031.2 | |
| J3_3JBV_033 | 1/b/32:35, 1/b/445:461, 1/b/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_3JBV_013 | 1/b/56:57, 1/b/70:77, 1/b/109:114 | No text annotation | ||
| J3_3JBV_014 | 1/b/683:689, 1/b/773:775, 1/b/791:794 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_3JBV_035 | 1/b/697:700, 1/b/732:736, 1/b/760:765 | No text annotation | geometric J3_5TBW_005 NA | |
| J3_3JBV_015 | 1/b/698:700, 1/b/732:736, 1/b/760:763 | No text annotation | geometric J3_5J7L_039 J3_44724.7 | |
| J3_3JBV_036 | 1/b/1053:1062, 1/b/1076:1092, 1/b/1099:1106 | No text annotation | ||
| J3_3JBV_016 | 1/b/1298:1304, 1/b/1624:1627, 1/b/1639:1642 | No text annotation | ||
| J3_3JBV_017 | 1/b/1306:1309, 1/b/1605:1611, 1/b/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
| J3_3JBV_039 | 1/b/1344:1350, 1/b/1381:1385, 1/b/1402:1403 | No text annotation | ||
| J3_3JBV_040 | 1/b/1424:1429, 1/b/1564:1565, 1/b/1568:1574 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_3JBV_041 | 1/b/2085:2093, 1/b/2196:2200, 1/b/2223:2234 | No text annotation | ||
| J3_3JBV_018 | 1/b/2089:2093, 1/b/2196:2200, 1/b/2223:2230 | No text annotation | ||
| J3_3JBV_051 | 1/b/2329:2347, 1/b/2370:2373, 1/b/2380:2386 | No text annotation | ||
| J3_3JBV_019 | 1/b/2517:2520, 1/b/2545:2547, 1/b/2561:2567 | No text annotation | ||
| J3_3JBV_043 | 1/b/2517:2523, 1/b/2540:2547, 1/b/2561:2567 | No text annotation | ||
| J3_3JBV_020 | 1/b/2789:2791, 1/b/2805:2806, 1/b/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_3JBV_021 | 1/b/2812:2815, 1/b/2831:2836, 1/b/2882:2888 | No text annotation | geometric J3_5J7L_048 J3_64069.1 | |
| J4_3JBV_013 | 1/A/115:124, 1/A/237:240, 1/A/286:289, 1/A/311:312 | No text annotation | ||
| J4_3JBV_002 | 1/A/569:577, 1/A/764:769, 1/A/810:821, 1/A/879:881 | No text annotation | ||
| J4_3JBV_014 | 1/V/7:10, 1/V/25:28, 1/V/42:49, 1/V/65:66 | tRNA junction | homologous J4_5WWT_001 J4_65285.1 | |
| J4_3JBV_004 | 1/b/268:269, 1/b/370:375, 1/b/399:406, 1/b/421:424 | No text annotation | ||
| J4_3JBV_005 | 1/b/293:301, 1/b/316:319, 1/b/323:325, 1/b/337:347 | No text annotation | ||
| J4_3JBV_015 | 1/b/598:604, 1/b/624:628, 1/b/635:638, 1/b/650:659 | No text annotation | ||
| J4_3JBV_016 | 1/b/1270:1276, 1/b/1294:1297, 1/b/1643:1648, 1/b/2009:2010 | No text annotation | ||
| J4_3JBV_017 | 1/b/1310:1315, 1/b/1337:1343, 1/b/1404:1405, 1/b/1597:1604 | No text annotation | ||
| J4_3JBV_018 | 1/b/1313:1315, 1/b/1337:1343, 1/b/1404:1405, 1/b/1597:1603 | No text annotation | ||
| J4_3JBV_010 | 1/b/1444:1445, 1/b/1466:1467, 1/b/1525:1526, 1/b/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_3JBV_011 | 1/b/2282:2283, 1/b/2325:2326, 1/b/2389:2395, 1/b/2421:2427 | No text annotation | ||
| J4_3JBV_019 | 1/b/2643:2646, 1/b/2674:2676, 1/b/2731:2735, 1/b/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J5_3JBV_010 | 1/A/36:41, 1/A/401:406, 1/A/436:440, 1/A/497:500, 1/A/545:548 | No text annotation | ||
| J5_3JBV_011 | 1/A/36:41, 1/A/401:406, 1/A/436:442, 1/A/492:500, 1/A/545:548 | No text annotation | ||
| J5_3JBV_003 | 1/A/58:61, 1/A/106:113, 1/A/314:316, 1/A/337:339, 1/A/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J5_3JBV_004 | 1/b/47:54, 1/b/116:121, 1/b/130:131, 1/b/148:150, 1/b/176:178 | No text annotation | homologous J5_4WF9_001 J5_01737.2 | |
| J5_3JBV_005 | 1/b/531:533, 1/b/560:564, 1/b/577:579, 1/b/1261:1262, 1/b/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_3JBV_012 | 1/b/582:593, 1/b/664:671, 1/b/809:812, 1/b/1195:1196, 1/b/1250:1258 | No text annotation | ||
| J5_3JBV_013 | 1/b/1674:1682, 1/b/1706:1707, 1/b/1751:1752, 1/b/1756:1764, 1/b/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_3JBV_008 | 1/b/2057:2064, 1/b/2446:2454, 1/b/2498:2507, 1/b/2582:2588, 1/b/2606:2611 | No text annotation | ||
| J5_3JBV_009 | 1/b/2074:2077, 1/b/2243:2246, 1/b/2258:2259, 1/b/2281:2282, 1/b/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
| J6_3JBV_001 | 1/b/45:46, 1/b/179:183, 1/b/214:224, 1/b/231:235, 1/b/262:266, 1/b/426:433 | No text annotation | ||
| J6_3JBV_002 | 1/b/1769:1776, 1/b/1788:1792, 1/b/1827:1835, 1/b/1905:1906, 1/b/1924:1933, 1/b/1967:1983 | No text annotation | ||
| J7_3JBV_001 | 1/b/8:23, 1/b/517:531, 1/b/2018:2024, 1/b/2039:2043, 1/b/2625:2630, 1/b/2788:2789, 1/b/2894:2895 | No text annotation | ||
| J7_3JBV_002 | 1/b/817:824, 1/b/833:838, 1/b/940:946, 1/b/971:977, 1/b/986:991, 1/b/1163:1164, 1/b/1185:1190 | No text annotation | ||
| J7_3JBV_003 | 1/b/2074:2077, 1/b/2243:2246, 1/b/2258:2259, 1/b/2281:2283, 1/b/2325:2326, 1/b/2389:2395, 1/b/2421:2435 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3JBV_001 | No text annotation | ||
| J3_3JBV_002 | No text annotation | ||
| J3_3JBV_024 | No text annotation | ||
| J3_3JBV_025 | No text annotation | ||
| J3_3JBV_026 | No text annotation | ||
| J3_3JBV_006 | No text annotation | ||
| J3_3JBV_029 | No text annotation | ||
| J3_3JBV_009 | No text annotation | ||
| J3_3JBV_031 | No text annotation | ||
| J3_3JBV_032 | No text annotation | ||
| J3_3JBV_034 | No text annotation | ||
| J3_3JBV_037 | No text annotation | ||
| J3_3JBV_038 | No text annotation | ||
| J3_3JBV_042 | No text annotation | ||
| J3_3JBV_044 | No text annotation | ||
| J4_3JBV_001 | No text annotation | ||
| J4_3JBV_003 | No text annotation | ||
| J4_3JBV_006 | No text annotation | ||
| J4_3JBV_007 | No text annotation | ||
| J4_3JBV_008 | No text annotation | ||
| J4_3JBV_009 | No text annotation | ||
| J4_3JBV_012 | No text annotation | ||
| J5_3JBV_001 | No text annotation | ||
| J5_3JBV_002 | No text annotation | ||
| J5_3JBV_006 | No text annotation | ||
| J5_3JBV_007 | No text annotation |
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