HL_3JBV_014

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GGCUCAACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_014 not in the Motif Atlas

Geometric match to HL_4V9K_033

Geometric discrepancy: 0.2855

The information below is about HL_4V9K_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

3JBV|1|A|G|616
3JBV|1|A|G|617
3JBV|1|A|C|618
3JBV|1|A|U|619
3JBV|1|A|C|620
3JBV|1|A|A|621
3JBV|1|A|A|622
3JBV|1|A|C|623
3JBV|1|A|C|624

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16