HL_3JBV_018

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CCCUUGAGG

Length

9 nucleotides

Bulged bases

3JBV|1|A|U|842, 3JBV|1|A|A|845

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_018 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.3477

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

3JBV|1|A|C|839
3JBV|1|A|C|840
3JBV|1|A|C|841
3JBV|1|A|U|842
3JBV|1|A|U|843
3JBV|1|A|G|844
3JBV|1|A|A|845
3JBV|1|A|G|846
3JBV|1|A|G|847

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain B

30S ribosomal protein S2

Chain R

30S ribosomal protein S18