HL_3JBV_022

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

AGAGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_022 not in the Motif Atlas

Homologous match to HL_4LFB_022

Geometric discrepancy: 0.3079

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

3JBV|1|A|A|1012
3JBV|1|A|G|1013
3JBV|1|A|A|1014
3JBV|1|A|G|1015
3JBV|1|A|A|1016
3JBV|1|A|U|1017

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain N

30S ribosomal protein S14

Chain S

30S ribosomal protein S19