HL_3JBV_023

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

3JBV|1|A|U|1030

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_023 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3936

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

3JBV|1|A|C|1028
3JBV|1|A|U|1029
3JBV|1|A|U|1030
3JBV|1|A|C|1031
3JBV|1|A|G|1032
3JBV|1|A|G|1033

Current chains

Chain A

RNA (1530-MER)

Nearby chains