HL_3JBV_027

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

3JBV|1|A|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_027 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.1884

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

3JBV|1|A|U|1165
3JBV|1|A|G|1166
3JBV|1|A|A|1167
3JBV|1|A|U|1168
3JBV|1|A|A|1169
3JBV|1|A|A|1170
3JBV|1|A|A|1171

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain B

30S ribosomal protein S2