HL_3JBV_060

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_060 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.2676

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

3JBV|1|b|G|712
3JBV|1|b|G|713
3JBV|1|b|U|714
3JBV|1|b|A|715
3JBV|1|b|A|716
3JBV|1|b|C|717
3JBV|1|b|A|718
3JBV|1|b|C|719

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain O

30S ribosomal protein S15