HL_3JBV_066

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_066 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.2314

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

3JBV|1|b|G|978
3JBV|1|b|A|979
3JBV|1|b|A|980
3JBV|1|b|A|981
3JBV|1|b|C|982
3JBV|1|b|A|983
3JBV|1|b|A|984
3JBV|1|b|C|985

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 2

50S ribosomal protein L30

Chain q

50S ribosomal protein L20

Chain r

50S ribosomal protein L21