HL_3JBV_068

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

3JBV|1|b|U|1097, 3JBV|1|b|A|1098

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_068 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.1916

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

3JBV|1|b|C|1092
3JBV|1|b|G|1093
3JBV|1|b|U|1094
3JBV|1|b|A|1095
3JBV|1|b|A|1096
3JBV|1|b|U|1097
3JBV|1|b|A|1098
3JBV|1|b|G|1099

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 8

50S ribosomal protein L36

Chain g

50S ribosomal protein L5

Chain i

50S ribosomal protein L9