3D structure

PDB id
3JBV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
Experimental method
ELECTRON MICROSCOPY
Resolution
3.32 Å

Loop

Sequence
UGUGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JBV_070 not in the Motif Atlas
Homologous match to HL_7A0S_031
Geometric discrepancy: 0.2477
The information below is about HL_7A0S_031
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_34789.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
397

Unit IDs

3JBV|1|b|U|1222
3JBV|1|b|G|1223
3JBV|1|b|U|1224
3JBV|1|b|G|1225
3JBV|1|b|A|1226
3JBV|1|b|G|1227

Current chains

Chain b
RNA (2903-MER)

Nearby chains

Chain q
50S ribosomal protein L20
Chain r
50S ribosomal protein L21

Coloring options:


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