HL_3JBV_074

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GGUUAAUAUUCC

Length

12 nucleotides

Bulged bases

3JBV|1|b|U|1396, 3JBV|1|b|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_074 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1638

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

3JBV|1|b|G|1388
3JBV|1|b|G|1389
3JBV|1|b|U|1390
3JBV|1|b|U|1391
3JBV|1|b|A|1392
3JBV|1|b|A|1393
3JBV|1|b|U|1394
3JBV|1|b|A|1395
3JBV|1|b|U|1396
3JBV|1|b|U|1397
3JBV|1|b|C|1398
3JBV|1|b|C|1399

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain t

50S ribosomal protein L23