HL_3JBV_080

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

3JBV|1|b|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_080 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.32

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

3JBV|1|b|U|1629
3JBV|1|b|A|1630
3JBV|1|b|G|1631
3JBV|1|b|A|1632
3JBV|1|b|G|1633
3JBV|1|b|A|1634
3JBV|1|b|A|1635
3JBV|1|b|U|1636
3JBV|1|b|A|1637

Current chains

Chain b

RNA (2903-MER)

Nearby chains