HL_3JBV_106

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

UGAAGACGACG

Length

11 nucleotides

Bulged bases

3JBV|1|b|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_106 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2432

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

3JBV|1|b|U|2818
3JBV|1|b|G|2819
3JBV|1|b|A|2820
3JBV|1|b|A|2821
3JBV|1|b|G|2822
3JBV|1|b|A|2823
3JBV|1|b|C|2824
3JBV|1|b|G|2825
3JBV|1|b|A|2826
3JBV|1|b|C|2827
3JBV|1|b|G|2828

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain d

50S ribosomal protein L11

Chain n

50S ribosomal protein L17