HL_3JBV_113
3D structure
- PDB id
- 3JBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.32 Å
Loop
- Sequence
- GGUUCGAUUCC
- Length
- 11 nucleotides
- Bulged bases
- 3JBV|1|V|C|56, 3JBV|1|V|G|57, 3JBV|1|V|U|59, 3JBV|1|V|U|60
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JBV_113 not in the Motif Atlas
- Homologous match to HL_6GSK_204
- Geometric discrepancy: 0.3448
- The information below is about HL_6GSK_204
- Detailed Annotation
- T-loop
- Broad Annotation
- T-loop
- Motif group
- HL_63894.2
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
3JBV|1|V|G|52
3JBV|1|V|G|53
3JBV|1|V|U|54
3JBV|1|V|U|55
3JBV|1|V|C|56
3JBV|1|V|G|57
3JBV|1|V|A|58
3JBV|1|V|U|59
3JBV|1|V|U|60
3JBV|1|V|C|61
3JBV|1|V|C|62
Current chains
- Chain V
- RNA (76-MER)
Nearby chains
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- 50S ribosomal protein L4
- Chain m
- 50S ribosomal protein L16
Coloring options: