HL_3JBV_118

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CCUUUUGUAUAAUG

Length

14 nucleotides

Bulged bases

3JBV|1|b|A|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBV|1|b|C|564
3JBV|1|b|C|565
3JBV|1|b|U|566
3JBV|1|b|U|567
3JBV|1|b|U|568
3JBV|1|b|U|569
3JBV|1|b|G|570
3JBV|1|b|U|571
3JBV|1|b|A|572
3JBV|1|b|U|573
3JBV|1|b|A|574
3JBV|1|b|A|575
3JBV|1|b|U|576
3JBV|1|b|G|577

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 3

50S ribosomal protein L32

Chain d

50S ribosomal protein L11

Chain l

50S ribosomal protein L15

Chain q

50S ribosomal protein L20

Chain r

50S ribosomal protein L21