HL_3JBV_119

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CUUAACUGG

Length

9 nucleotides

Bulged bases

3JBV|1|b|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_119 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3094

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

3JBV|1|b|C|640
3JBV|1|b|U|641
3JBV|1|b|U|642
3JBV|1|b|A|643
3JBV|1|b|A|644
3JBV|1|b|C|645
3JBV|1|b|U|646
3JBV|1|b|G|647
3JBV|1|b|G|648

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 4

50S ribosomal protein L33

Chain 7

50S ribosomal protein L35