HL_3JBV_120

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GUGAAAGGC

Length

9 nucleotides

Bulged bases

3JBV|1|b|A|781, 3JBV|1|b|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_120 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.2722

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3JBV|1|b|G|778
3JBV|1|b|U|779
3JBV|1|b|G|780
3JBV|1|b|A|781
3JBV|1|b|A|782
3JBV|1|b|A|783
3JBV|1|b|G|784
3JBV|1|b|G|785
3JBV|1|b|C|786

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain c

50S ribosomal protein L2