HL_3JBV_125

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CCCUCGCGG

Length

9 nucleotides

Bulged bases

3JBV|1|b|U|1729, 3JBV|1|b|C|1730, 3JBV|1|b|C|1732

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_125 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.249

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

3JBV|1|b|C|1726
3JBV|1|b|C|1727
3JBV|1|b|C|1728
3JBV|1|b|U|1729
3JBV|1|b|C|1730
3JBV|1|b|G|1731
3JBV|1|b|C|1732
3JBV|1|b|G|1733
3JBV|1|b|G|1734

Current chains

Chain b

RNA (2903-MER)

Nearby chains