HL_3JBV_126

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGC

Length

33 nucleotides

Bulged bases

3JBV|1|b|U|2130, 3JBV|1|b|U|2131, 3JBV|1|b|U|2132, 3JBV|1|b|G|2144, 3JBV|1|b|C|2145, 3JBV|1|b|C|2146, 3JBV|1|b|A|2147, 3JBV|1|b|G|2157, 3JBV|1|b|A|2158

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBV|1|b|G|2128
3JBV|1|b|C|2129
3JBV|1|b|U|2130
3JBV|1|b|U|2131
3JBV|1|b|U|2132
3JBV|1|b|G|2133
3JBV|1|b|A|2134
3JBV|1|b|A|2135
3JBV|1|b|G|2136
3JBV|1|b|U|2137
3JBV|1|b|G|2138
3JBV|1|b|U|2139
3JBV|1|b|G|2140
3JBV|1|b|G|2141
3JBV|1|b|A|2142
3JBV|1|b|C|2143
3JBV|1|b|G|2144
3JBV|1|b|C|2145
3JBV|1|b|C|2146
3JBV|1|b|A|2147
3JBV|1|b|G|2148
3JBV|1|b|U|2149
3JBV|1|b|C|2150
3JBV|1|b|U|2151
3JBV|1|b|G|2152
3JBV|1|b|C|2153
3JBV|1|b|A|2154
3JBV|1|b|U|2155
3JBV|1|b|G|2156
3JBV|1|b|G|2157
3JBV|1|b|A|2158
3JBV|1|b|G|2159
3JBV|1|b|C|2160

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain G

30S ribosomal protein S7