HL_3JBV_129

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

3JBV|1|A|C|1136, 3JBV|1|A|G|1139

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_129 not in the Motif Atlas

Homologous match to HL_5J7L_025

Geometric discrepancy: 0.5486

The information below is about HL_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

3JBV|1|A|G|1134
3JBV|1|A|U|1135
3JBV|1|A|C|1136
3JBV|1|A|C|1137
3JBV|1|A|G|1138
3JBV|1|A|G|1139
3JBV|1|A|C|1140

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain I

30S ribosomal protein S9