HL_3JCD_002
3D structure
- PDB id
- 3JCD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAUUGAAAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCD_002 not in the Motif Atlas
- Geometric match to HL_4UYK_001
- Geometric discrepancy: 0.3735
- The information below is about HL_4UYK_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14063.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
3JCD|1|8|G|30
3JCD|1|8|A|31
3JCD|1|8|U|32
3JCD|1|8|U|33
3JCD|1|8|G|34
3JCD|1|8|A|35
3JCD|1|8|A|36
3JCD|1|8|A|37
3JCD|1|8|A|38
3JCD|1|8|U|39
3JCD|1|8|C|40
Current chains
- Chain 8
- tRNA
Nearby chains
- Chain 7
- mRNA
- Chain 9
- Transfer RNA; tRNA
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain i
- 30S ribosomal protein S9
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