HL_3JCD_017

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

3JCD|1|A|G|329, 3JCD|1|A|A|330, 3JCD|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCD_017 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1566

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

3JCD|1|A|G|327
3JCD|1|A|U|328
3JCD|1|A|G|329
3JCD|1|A|A|330
3JCD|1|A|C|331
3JCD|1|A|A|332
3JCD|1|A|G|333
3JCD|1|A|C|334
3JCD|1|A|C|335

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24