HL_3JCD_019

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGACCAUCC

Length

10 nucleotides

Bulged bases

3JCD|1|A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCD_019 not in the Motif Atlas

Geometric match to HL_4V83_139

Geometric discrepancy: 0.3399

The information below is about HL_4V83_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53597.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

3JCD|1|A|G|409
3JCD|1|A|G|410
3JCD|1|A|G|411
3JCD|1|A|A|412
3JCD|1|A|C|413
3JCD|1|A|C|414
3JCD|1|A|A|415
3JCD|1|A|U|416
3JCD|1|A|C|417
3JCD|1|A|C|418

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15