HL_3JCD_022

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

3JCD|1|A|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCD_022 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.4378

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

3JCD|1|A|G|543
3JCD|1|A|C|544
3JCD|1|A|U|545
3JCD|1|A|U|546
3JCD|1|A|A|547
3JCD|1|A|G|548
3JCD|1|A|G|549
3JCD|1|A|C|550

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain R

50S ribosomal protein L21