HL_3JCD_034

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCUUAGAAGCAGC

Length

13 nucleotides

Bulged bases

3JCD|1|A|A|1067, 3JCD|1|A|G|1068, 3JCD|1|A|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCD_034 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.1798

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

3JCD|1|A|G|1063
3JCD|1|A|C|1064
3JCD|1|A|U|1065
3JCD|1|A|U|1066
3JCD|1|A|A|1067
3JCD|1|A|G|1068
3JCD|1|A|A|1069
3JCD|1|A|A|1070
3JCD|1|A|G|1071
3JCD|1|A|C|1072
3JCD|1|A|A|1073
3JCD|1|A|G|1074
3JCD|1|A|C|1075

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L11

Chain M

50S ribosomal protein L16