3D structure

PDB id
3JCD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GUAACUAUAAC
Length
11 nucleotides
Bulged bases
3JCD|1|A|A|1913
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JCD_054 not in the Motif Atlas
Geometric match to HL_5TBW_049
Geometric discrepancy: 0.2174
The information below is about HL_5TBW_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_84702.1
Basepair signature
cWW-F-F-tHW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

3JCD|1|A|G|1910
3JCD|1|A|U|1911
3JCD|1|A|A|1912
3JCD|1|A|A|1913
3JCD|1|A|C|1914
3JCD|1|A|U|1915
3JCD|1|A|A|1916
3JCD|1|A|U|1917
3JCD|1|A|A|1918
3JCD|1|A|A|1919
3JCD|1|A|C|1920

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 8
Transfer RNA; tRNA
Chain a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0956 s
Application loaded.