HL_3JCD_054

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

3JCD|1|A|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCD_054 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.2174

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

3JCD|1|A|G|1910
3JCD|1|A|U|1911
3JCD|1|A|A|1912
3JCD|1|A|A|1913
3JCD|1|A|C|1914
3JCD|1|A|U|1915
3JCD|1|A|A|1916
3JCD|1|A|U|1917
3JCD|1|A|A|1918
3JCD|1|A|A|1919
3JCD|1|A|C|1920

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain a

Small subunit ribosomal RNA; SSU rRNA