HL_3JCD_060

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

3JCD|1|A|A|2268, 3JCD|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCD_060 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.1364

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

3JCD|1|A|C|2264
3JCD|1|A|U|2265
3JCD|1|A|A|2266
3JCD|1|A|A|2267
3JCD|1|A|A|2268
3JCD|1|A|G|2269
3JCD|1|A|A|2270
3JCD|1|A|G|2271
3JCD|1|A|U|2272
3JCD|1|A|A|2273
3JCD|1|A|A|2274
3JCD|1|A|C|2275
3JCD|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27