HL_3JCD_072

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

3JCD|1|A|G|2751, 3JCD|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCD_072 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1282

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

3JCD|1|A|C|2745
3JCD|1|A|U|2746
3JCD|1|A|G|2747
3JCD|1|A|A|2748
3JCD|1|A|A|2749
3JCD|1|A|A|2750
3JCD|1|A|G|2751
3JCD|1|A|C|2752
3JCD|1|A|A|2753
3JCD|1|A|U|2754
3JCD|1|A|C|2755
3JCD|1|A|U|2756
3JCD|1|A|A|2757
3JCD|1|A|A|2758
3JCD|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6