HL_3JCD_083

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

3JCD|1|a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCD_083 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.2043

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

3JCD|1|a|G|259
3JCD|1|a|G|260
3JCD|1|a|U|261
3JCD|1|a|A|262
3JCD|1|a|A|263
3JCD|1|a|C|264
3JCD|1|a|G|265
3JCD|1|a|G|266
3JCD|1|a|C|267

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20