3D structure

PDB id
3JCD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GAUGCAACGC
Length
10 nucleotides
Bulged bases
3JCD|1|a|G|971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JCD_098 not in the Motif Atlas
Homologous match to HL_4LFB_021
Geometric discrepancy: 0.1273
The information below is about HL_4LFB_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50779.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

3JCD|1|a|G|963
3JCD|1|a|A|964
3JCD|1|a|U|965
3JCD|1|a|G|966
3JCD|1|a|C|967
3JCD|1|a|A|968
3JCD|1|a|A|969
3JCD|1|a|C|970
3JCD|1|a|G|971
3JCD|1|a|C|972

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain 8
Transfer RNA; tRNA
Chain i
30S ribosomal protein S9
Chain j
30S ribosomal protein S10
Chain m
30S ribosomal protein S13

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2666 s