HL_3JCD_112

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGUAACGGCU

Length

11 nucleotides

Bulged bases

3JCD|1|a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCD_112 not in the Motif Atlas

Geometric match to HL_3FOZ_004

Geometric discrepancy: 0.373

The information below is about HL_3FOZ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

3JCD|1|a|G|258
3JCD|1|a|G|259
3JCD|1|a|G|260
3JCD|1|a|U|261
3JCD|1|a|A|262
3JCD|1|a|A|263
3JCD|1|a|C|264
3JCD|1|a|G|265
3JCD|1|a|G|266
3JCD|1|a|C|267
3JCD|1|a|U|268

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20