HL_3JCE_003
3D structure
- PDB id
- 3JCE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUCGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCE_003 not in the Motif Atlas
- Geometric match to HL_4LCK_003
- Geometric discrepancy: 0.1483
- The information below is about HL_4LCK_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
3JCE|1|6|G|53
3JCE|1|6|U|54
3JCE|1|6|U|55
3JCE|1|6|C|56
3JCE|1|6|G|57
3JCE|1|6|A|58
3JCE|1|6|U|59
3JCE|1|6|U|60
3JCE|1|6|C|61
Current chains
- Chain 6
- tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain I
- 50S ribosomal protein L11
- Chain M
- 50S ribosomal protein L16
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