3JCE Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3JCE_001 | tRNA D-loop | ||
| HL_3JCE_002 | tRNA anticodon loop | ||
| HL_3JCE_003 | T-loop with 2 stacked bulged bases | ||
| HL_3JCE_004 | tRNA D-loop | ||
| HL_3JCE_005 | tRNA anticodon loop | ||
| HL_3JCE_006 | T-loop with 2 stacked bulged bases | ||
| HL_3JCE_007 | tRNA D-loop | ||
| HL_3JCE_008 | No text annotation | ||
| HL_3JCE_009 | T-loop with 2 stacked bulged bases | ||
| HL_3JCE_113 | No text annotation | ||
| HL_3JCE_010 | No text annotation | ||
| HL_3JCE_011 | No text annotation | ||
| HL_3JCE_012 | No text annotation | ||
| HL_3JCE_013 | No text annotation | ||
| HL_3JCE_014 | No text annotation | ||
| HL_3JCE_015 | No text annotation | ||
| HL_3JCE_114 | No text annotation | ||
| HL_3JCE_016 | No text annotation | ||
| HL_3JCE_017 | No text annotation | ||
| HL_3JCE_018 | No text annotation | ||
| HL_3JCE_115 | T-loop with 1 bulged base | ||
| HL_3JCE_019 | No text annotation | ||
| HL_3JCE_020 | T-loop with unstacked turn | ||
| HL_3JCE_116 | No text annotation | ||
| HL_3JCE_021 | No text annotation | ||
| HL_3JCE_022 | Pseudoknot geometry | ||
| HL_3JCE_023 | GNRA | ||
| HL_3JCE_024 | GNRA | ||
| HL_3JCE_025 | No text annotation | ||
| HL_3JCE_026 | No text annotation | ||
| HL_3JCE_027 | No text annotation | ||
| HL_3JCE_028 | GNRA | ||
| HL_3JCE_029 | No text annotation | ||
| HL_3JCE_030 | GNRA wlth tandem sheared | ||
| HL_3JCE_031 | No text annotation | ||
| HL_3JCE_032 | No text annotation | ||
| HL_3JCE_033 | No text annotation | ||
| HL_3JCE_034 | No text annotation | ||
| HL_3JCE_124 | No text annotation | ||
| HL_3JCE_035 | GNRA | ||
| HL_3JCE_036 | No text annotation | ||
| HL_3JCE_037 | No text annotation | ||
| HL_3JCE_038 | GNRA wlth tandem sheared | ||
| HL_3JCE_039 | No text annotation | ||
| HL_3JCE_040 | GNRA | ||
| HL_3JCE_041 | T-loop with 2 stacked bulged bases | ||
| HL_3JCE_042 | Pseudoknot geometry with 3' bulge | ||
| HL_3JCE_043 | GNRA | ||
| HL_3JCE_044 | No text annotation | ||
| HL_3JCE_045 | Mini UNCG with extended bulge | ||
| HL_3JCE_046 | Pseudoknot geometry with 3' bulge | ||
| HL_3JCE_047 | No text annotation | ||
| HL_3JCE_117 | No text annotation | ||
| HL_3JCE_048 | Mini UNCG | ||
| HL_3JCE_049 | No text annotation | ||
| HL_3JCE_050 | GNRA | ||
| HL_3JCE_051 | No text annotation | ||
| HL_3JCE_052 | No text annotation | ||
| HL_3JCE_053 | No text annotation | ||
| HL_3JCE_054 | No text annotation | ||
| HL_3JCE_055 | GNRA related | ||
| HL_3JCE_056 | GNRA related | ||
| HL_3JCE_057 | No text annotation | ||
| HL_3JCE_058 | No text annotation | ||
| HL_3JCE_059 | No text annotation | ||
| HL_3JCE_060 | No text annotation | ||
| HL_3JCE_061 | No text annotation | ||
| HL_3JCE_062 | No text annotation | ||
| HL_3JCE_063 | No text annotation | ||
| HL_3JCE_118 | No text annotation | ||
| HL_3JCE_064 | No text annotation | ||
| HL_3JCE_125 | No text annotation | ||
| HL_3JCE_065 | Pseudoknot geometry | ||
| HL_3JCE_066 | GNRA | ||
| HL_3JCE_067 | GNRA | ||
| HL_3JCE_068 | No text annotation | ||
| HL_3JCE_069 | No text annotation | ||
| HL_3JCE_070 | GNRA variation | ||
| HL_3JCE_071 | No text annotation | ||
| HL_3JCE_072 | GNRA | ||
| HL_3JCE_073 | GNRA | ||
| HL_3JCE_074 | Ribsomal LSU H95 | ||
| HL_3JCE_075 | No text annotation | ||
| HL_3JCE_076 | UNCG variation | ||
| HL_3JCE_077 | No text annotation | ||
| HL_3JCE_078 | GNRA | ||
| HL_3JCE_119 | No text annotation | ||
| HL_3JCE_126 | No text annotation | ||
| HL_3JCE_079 | No text annotation | ||
| HL_3JCE_080 | Mini UNCG | ||
| HL_3JCE_081 | No text annotation | ||
| HL_3JCE_082 | No text annotation | ||
| HL_3JCE_127 | No text annotation | ||
| HL_3JCE_083 | GNRA | ||
| HL_3JCE_084 | GNRA | ||
| HL_3JCE_085 | UNCG | ||
| HL_3JCE_086 | GNRA related | ||
| HL_3JCE_087 | GNRA | ||
| HL_3JCE_120 | No text annotation | ||
| HL_3JCE_088 | No text annotation | ||
| HL_3JCE_128 | No text annotation | ||
| HL_3JCE_089 | UNCG | ||
| HL_3JCE_121 | No text annotation | ||
| HL_3JCE_090 | GNRA | ||
| HL_3JCE_091 | UNCG | ||
| HL_3JCE_092 | GNRA wlth extra near cWW | ||
| HL_3JCE_122 | No text annotation | ||
| HL_3JCE_093 | No text annotation | ||
| HL_3JCE_094 | GNRA-like with tWH | ||
| HL_3JCE_095 | No text annotation | ||
| HL_3JCE_096 | GNRA | ||
| HL_3JCE_097 | No text annotation | ||
| HL_3JCE_098 | No text annotation | ||
| HL_3JCE_099 | GNRA | ||
| HL_3JCE_100 | GNRA | ||
| HL_3JCE_101 | No text annotation | ||
| HL_3JCE_123 | No text annotation | ||
| HL_3JCE_102 | GNRA | ||
| HL_3JCE_103 | No text annotation | ||
| HL_3JCE_104 | GNRA | ||
| HL_3JCE_105 | T-loop related | ||
| HL_3JCE_106 | No text annotation | ||
| HL_3JCE_107 | GNRA | ||
| HL_3JCE_108 | GNRA | ||
| HL_3JCE_109 | T-loop with 3 stacked bulged bases | ||
| HL_3JCE_110 | No text annotation | ||
| HL_3JCE_111 | UNCG | ||
| HL_3JCE_112 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3JCE_001 | Stack outside cWW | ||
| IL_3JCE_174 | Single stack bend | ||
| IL_3JCE_002 | No text annotation | ||
| IL_3JCE_003 | Triple sheared with non-canonical cWW | ||
| IL_3JCE_004 | Single bulged A | ||
| IL_3JCE_198 | Minor groove platform | ||
| IL_3JCE_005 | Major groove platform with extra cWW | ||
| IL_3JCE_175 | No text annotation | ||
| IL_3JCE_176 | No text annotation | ||
| IL_3JCE_006 | Kink-turn | ||
| IL_3JCE_199 | No text annotation | ||
| IL_3JCE_007 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_3JCE_008 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_3JCE_009 | No text annotation | ||
| IL_3JCE_010 | No text annotation | ||
| IL_3JCE_177 | Tandem non-canonical cWW pairs | ||
| IL_3JCE_011 | No text annotation | ||
| IL_3JCE_012 | No text annotation | ||
| IL_3JCE_013 | Double sheared | ||
| IL_3JCE_014 | AAA cross-strand stack | ||
| IL_3JCE_015 | Isolated non-canonical cWW pair | ||
| IL_3JCE_016 | tHW-tHW cross-strand stack | ||
| IL_3JCE_017 | Single bulged A | ||
| IL_3JCE_018 | Single bulged G | ||
| IL_3JCE_019 | Triple sheared | ||
| IL_3JCE_020 | Major groove platform | ||
| IL_3JCE_021 | Multiple bulged bases | ||
| IL_3JCE_022 | No text annotation | ||
| IL_3JCE_023 | Single stack bend | ||
| IL_3JCE_024 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_3JCE_025 | Single bulged G | ||
| IL_3JCE_026 | C-loop with bulged stacked A's | ||
| IL_3JCE_178 | No text annotation | ||
| IL_3JCE_027 | Isolated non-canonical cWW pair | ||
| IL_3JCE_028 | Double sheared with non-canonical cWW | ||
| IL_3JCE_200 | No text annotation | ||
| IL_3JCE_029 | Single bulged C | ||
| IL_3JCE_030 | UAA/GAN with extra cWW | ||
| IL_3JCE_179 | UAA/GAN | ||
| IL_3JCE_031 | SSU/LSU pseudoknot | ||
| IL_3JCE_032 | Single bulged U | ||
| IL_3JCE_033 | Kink-turn related | ||
| IL_3JCE_034 | No text annotation | ||
| IL_3JCE_035 | Isolated non-canonical cWW pair | ||
| IL_3JCE_036 | Tandem non-canonical cWW pairs | ||
| IL_3JCE_201 | Kink-turn | ||
| IL_3JCE_037 | No text annotation | ||
| IL_3JCE_180 | No text annotation | ||
| IL_3JCE_038 | No text annotation | ||
| IL_3JCE_039 | Major groove platform | ||
| IL_3JCE_202 | Isolated cWS basepair | ||
| IL_3JCE_040 | Tandem non-canonical cWW pairs | ||
| IL_3JCE_181 | No text annotation | ||
| IL_3JCE_203 | No text annotation | ||
| IL_3JCE_041 | No text annotation | ||
| IL_3JCE_042 | Kink-turn | ||
| IL_3JCE_043 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_3JCE_044 | Major groove platform; stack outside cWW | ||
| IL_3JCE_045 | C-loop | ||
| IL_3JCE_046 | UAA/GAN | ||
| IL_3JCE_047 | tSH-tHW-tHS | ||
| IL_3JCE_048 | No text annotation | ||
| IL_3JCE_182 | No text annotation | ||
| IL_3JCE_049 | UAA/GAN | ||
| IL_3JCE_050 | Tandem non-canonical cWW pairs | ||
| IL_3JCE_051 | tSH-tHW | ||
| IL_3JCE_052 | Single bulged U | ||
| IL_3JCE_053 | No text annotation | ||
| IL_3JCE_054 | tSH-tHW-tHS | ||
| IL_3JCE_055 | 180 degree turn | ||
| IL_3JCE_183 | No text annotation | ||
| IL_3JCE_056 | Single bulged A | ||
| IL_3JCE_057 | UAA/GAN variation | ||
| IL_3JCE_058 | No text annotation | ||
| IL_3JCE_059 | Isolated tWW turn | ||
| IL_3JCE_060 | Major groove platform; stack outside cWW | ||
| IL_3JCE_184 | No text annotation | ||
| IL_3JCE_061 | Intercalated tWH | ||
| IL_3JCE_062 | tSH-tSH-tHH-tHS | ||
| IL_3JCE_063 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_3JCE_064 | Triple sheared | ||
| IL_3JCE_065 | Single bulged C | ||
| IL_3JCE_185 | Tandem non-canonical cWW pairs | ||
| IL_3JCE_066 | Single bulged A | ||
| IL_3JCE_067 | Kink-turn related | ||
| IL_3JCE_068 | Minor groove platform, major groove intercalation | ||
| IL_3JCE_069 | Major groove intercalation | ||
| IL_3JCE_070 | Minor groove platform | ||
| IL_3JCE_186 | No text annotation | ||
| IL_3JCE_071 | UAA/GAN related | ||
| IL_3JCE_072 | Bulged stacked bases | ||
| IL_3JCE_073 | No text annotation | ||
| IL_3JCE_074 | Major groove platform | ||
| IL_3JCE_075 | No text annotation | ||
| IL_3JCE_076 | Single bulged U | ||
| IL_3JCE_187 | No text annotation | ||
| IL_3JCE_077 | Minor groove platform | ||
| IL_3JCE_078 | Isolated tHS basepair with bulges | ||
| IL_3JCE_079 | Isolated non-canonical cWW pair | ||
| IL_3JCE_080 | Isolated non-canonical cWW pair | ||
| IL_3JCE_081 | Tandem non-canonical cWW pairs with near WC pairs | ||
| IL_3JCE_188 | Triple non-canonical cWW pairs | ||
| IL_3JCE_204 | Isolated non-canonical cWW pair | ||
| IL_3JCE_082 | No text annotation | ||
| IL_3JCE_189 | No text annotation | ||
| IL_3JCE_083 | No text annotation | ||
| IL_3JCE_084 | Single bulged U | ||
| IL_3JCE_085 | Double sheared | ||
| IL_3JCE_086 | No text annotation | ||
| IL_3JCE_087 | Major groove platform | ||
| IL_3JCE_088 | Major groove platform | ||
| IL_3JCE_190 | No text annotation | ||
| IL_3JCE_089 | Major groove minor groove platform with extra cWW | ||
| IL_3JCE_090 | Double sheared with non-canonical cWW | ||
| IL_3JCE_091 | Major groove platform | ||
| IL_3JCE_092 | Isolated non-canonical cWW with bulges | ||
| IL_3JCE_093 | No text annotation | ||
| IL_3JCE_094 | Major groove platform with intercalation | ||
| IL_3JCE_095 | Single bulged A | ||
| IL_3JCE_096 | tSH-tHS-tHW | ||
| IL_3JCE_097 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_3JCE_098 | C-loop | ||
| IL_3JCE_099 | UAA/GAN related, with intercalation | ||
| IL_3JCE_100 | Multiple bulged bases | ||
| IL_3JCE_101 | UAA/GAN with extra cWW | ||
| IL_3JCE_102 | No text annotation | ||
| IL_3JCE_103 | Major groove intercalation | ||
| IL_3JCE_104 | Multiple bulged bases with non-canonical cWW | ||
| IL_3JCE_105 | tHS double platform | ||
| IL_3JCE_191 | Major groove intercalation | ||
| IL_3JCE_106 | Isolated non-canonical cWW with bulges | ||
| IL_3JCE_107 | No text annotation | ||
| IL_3JCE_108 | No text annotation | ||
| IL_3JCE_205 | Major groove minor groove platform; mini C-loop | ||
| IL_3JCE_109 | No text annotation | ||
| IL_3JCE_206 | Symmetric double minor groove platform | ||
| IL_3JCE_110 | Bacterial 5S Loop E | ||
| IL_3JCE_111 | Single bulged G | ||
| IL_3JCE_112 | Single bulged A | ||
| IL_3JCE_113 | No text annotation | ||
| IL_3JCE_114 | Minor groove platform | ||
| IL_3JCE_115 | Multiple bulged bases | ||
| IL_3JCE_116 | Minor groove platform with extra cWW | ||
| IL_3JCE_117 | No text annotation | ||
| IL_3JCE_207 | Minor groove platform | ||
| IL_3JCE_118 | Isolated non-canonical cWW pair | ||
| IL_3JCE_119 | Minor groove platform related | ||
| IL_3JCE_120 | Isolated cWH basepair | ||
| IL_3JCE_121 | tWH-tWH-tHW-tHW | ||
| IL_3JCE_208 | Minor groove platform | ||
| IL_3JCE_122 | No text annotation | ||
| IL_3JCE_123 | No text annotation | ||
| IL_3JCE_192 | No text annotation | ||
| IL_3JCE_124 | No text annotation | ||
| IL_3JCE_125 | C-loop | ||
| IL_3JCE_126 | Single bulged U | ||
| IL_3JCE_127 | C-loop | ||
| IL_3JCE_193 | C-loop with extra cWW pair | ||
| IL_3JCE_128 | Single bulged G | ||
| IL_3JCE_129 | No text annotation | ||
| IL_3JCE_130 | No text annotation | ||
| IL_3JCE_131 | tSH-tHW-tWW | ||
| IL_3JCE_132 | No text annotation | ||
| IL_3JCE_133 | SSU/LSU pseudoknot | ||
| IL_3JCE_134 | Kink-turn related | ||
| IL_3JCE_135 | No text annotation | ||
| IL_3JCE_136 | tSH-tHW-tHS | ||
| IL_3JCE_137 | Major groove platform | ||
| IL_3JCE_138 | Major groove minor groove platform; mini C-loop | ||
| IL_3JCE_139 | No text annotation | ||
| IL_3JCE_140 | Major groove platform; stack outside cWW | ||
| IL_3JCE_141 | Single stack bend | ||
| IL_3JCE_194 | No text annotation | ||
| IL_3JCE_142 | Partly complementary | ||
| IL_3JCE_209 | Tandem non-canonical cWW pairs | ||
| IL_3JCE_195 | Triple non-canonical cWW pairs | ||
| IL_3JCE_143 | No text annotation | ||
| IL_3JCE_144 | Kink-turn | ||
| IL_3JCE_145 | Left turn | ||
| IL_3JCE_146 | tSH-tHW-tHS | ||
| IL_3JCE_147 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_3JCE_148 | Single bulged A | ||
| IL_3JCE_149 | Single bulged G | ||
| IL_3JCE_150 | Minor groove platform | ||
| IL_3JCE_151 | No text annotation | ||
| IL_3JCE_152 | Minor groove platform | ||
| IL_3JCE_153 | No text annotation | ||
| IL_3JCE_210 | No text annotation | ||
| IL_3JCE_196 | No text annotation | ||
| IL_3JCE_154 | Single bulged U | ||
| IL_3JCE_155 | Isolated cWS basepair | ||
| IL_3JCE_156 | Minor groove platform | ||
| IL_3JCE_157 | Tandem non-canonical cWW pairs | ||
| IL_3JCE_197 | No text annotation | ||
| IL_3JCE_158 | No text annotation | ||
| IL_3JCE_211 | Minor groove platform | ||
| IL_3JCE_159 | No text annotation | ||
| IL_3JCE_160 | No text annotation | ||
| IL_3JCE_161 | No text annotation | ||
| IL_3JCE_162 | 180 degree turn | ||
| IL_3JCE_163 | Double sheared with non-canonical cWW | ||
| IL_3JCE_164 | No text annotation | ||
| IL_3JCE_165 | No text annotation | ||
| IL_3JCE_166 | No text annotation | ||
| IL_3JCE_167 | Isolated non-canonical cWW pair | ||
| IL_3JCE_168 | Decoding loop related | ||
| IL_3JCE_169 | Isolated non-canonical cWW pair | ||
| IL_3JCE_170 | Double sheared | ||
| IL_3JCE_171 | Triple sheared related | ||
| IL_3JCE_172 | No text annotation | ||
| IL_3JCE_173 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3JCE_001 | No text annotation | ||
| J3_3JCE_027 | No text annotation | ||
| J3_3JCE_028 | No text annotation | ||
| J3_3JCE_002 | No text annotation | ||
| J3_3JCE_029 | No text annotation | ||
| J3_3JCE_030 | No text annotation | ||
| J3_3JCE_003 | No text annotation | ||
| J3_3JCE_031 | No text annotation | ||
| J3_3JCE_045 | No text annotation | ||
| J3_3JCE_004 | No text annotation | ||
| J3_3JCE_005 | No text annotation | ||
| J3_3JCE_032 | No text annotation | ||
| J3_3JCE_006 | No text annotation | ||
| J3_3JCE_007 | No text annotation | ||
| J3_3JCE_008 | No text annotation | ||
| J3_3JCE_046 | No text annotation | ||
| J3_3JCE_033 | No text annotation | ||
| J3_3JCE_009 | Kink-turn 3-way junction | ||
| J3_3JCE_034 | No text annotation | ||
| J3_3JCE_010 | No text annotation | ||
| J3_3JCE_011 | No text annotation | ||
| J3_3JCE_012 | No text annotation | ||
| J3_3JCE_013 | No text annotation | ||
| J3_3JCE_035 | No text annotation | ||
| J3_3JCE_014 | No text annotation | ||
| J3_3JCE_036 | No text annotation | ||
| J3_3JCE_015 | No text annotation | ||
| J3_3JCE_037 | No text annotation | ||
| J3_3JCE_016 | No text annotation | ||
| J3_3JCE_038 | No text annotation | ||
| J3_3JCE_017 | No text annotation | ||
| J3_3JCE_018 | No text annotation | ||
| J3_3JCE_039 | No text annotation | ||
| J3_3JCE_040 | No text annotation | ||
| J3_3JCE_019 | No text annotation | ||
| J3_3JCE_020 | No text annotation | ||
| J3_3JCE_041 | No text annotation | ||
| J3_3JCE_042 | No text annotation | ||
| J3_3JCE_021 | No text annotation | ||
| J3_3JCE_047 | No text annotation | ||
| J3_3JCE_022 | No text annotation | ||
| J3_3JCE_023 | No text annotation | ||
| J3_3JCE_024 | No text annotation | ||
| J3_3JCE_025 | No text annotation | ||
| J3_3JCE_043 | No text annotation | ||
| J3_3JCE_026 | No text annotation | ||
| J3_3JCE_048 | No text annotation | ||
| J3_3JCE_044 | No text annotation | ||
| J4_3JCE_001 | tRNA junction | ||
| J4_3JCE_002 | tRNA junction | ||
| J4_3JCE_003 | No text annotation | ||
| J4_3JCE_017 | No text annotation | ||
| J4_3JCE_004 | No text annotation | ||
| J4_3JCE_018 | No text annotation | ||
| J4_3JCE_005 | No text annotation | ||
| J4_3JCE_006 | No text annotation | ||
| J4_3JCE_007 | No text annotation | ||
| J4_3JCE_008 | No text annotation | ||
| J4_3JCE_009 | No text annotation | ||
| J4_3JCE_010 | No text annotation | ||
| J4_3JCE_011 | No text annotation | ||
| J4_3JCE_012 | No text annotation | ||
| J4_3JCE_013 | No text annotation | ||
| J4_3JCE_019 | No text annotation | ||
| J4_3JCE_014 | No text annotation | ||
| J4_3JCE_015 | No text annotation | ||
| J4_3JCE_016 | No text annotation | ||
| J5_3JCE_011 | No text annotation | ||
| J5_3JCE_001 | No text annotation | ||
| J5_3JCE_002 | No text annotation | ||
| J5_3JCE_012 | No text annotation | ||
| J5_3JCE_003 | No text annotation | ||
| J5_3JCE_004 | No text annotation | ||
| J5_3JCE_005 | No text annotation | ||
| J5_3JCE_006 | No text annotation | ||
| J5_3JCE_007 | No text annotation | ||
| J5_3JCE_013 | No text annotation | ||
| J5_3JCE_008 | No text annotation | ||
| J5_3JCE_014 | No text annotation | ||
| J5_3JCE_009 | No text annotation | ||
| J5_3JCE_010 | No text annotation | ||
| J6_3JCE_001 | No text annotation | ||
| J7_3JCE_003 | No text annotation | ||
| J7_3JCE_001 | No text annotation | ||
| J7_3JCE_002 | No text annotation |
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