HL_3JCE_044

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

3JCE|1|A|A|1392, 3JCE|1|A|U|1396, 3JCE|1|A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCE_044 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1329

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3JCE|1|A|G|1389
3JCE|1|A|U|1390
3JCE|1|A|U|1391
3JCE|1|A|A|1392
3JCE|1|A|A|1393
3JCE|1|A|U|1394
3JCE|1|A|A|1395
3JCE|1|A|U|1396
3JCE|1|A|U|1397
3JCE|1|A|C|1398

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23