HL_3JCE_049

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

3JCE|1|A|A|1614, 3JCE|1|A|A|1616, 3JCE|1|A|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCE_049 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.1137

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

3JCE|1|A|C|1612
3JCE|1|A|G|1613
3JCE|1|A|A|1614
3JCE|1|A|C|1615
3JCE|1|A|A|1616
3JCE|1|A|C|1617
3JCE|1|A|A|1618
3JCE|1|A|G|1619

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain S

50S ribosomal protein L22