3D structure

PDB id
3JCE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUGAAGAUGC
Length
10 nucleotides
Bulged bases
3JCE|1|A|A|2030, 3JCE|1|A|A|2031, 3JCE|1|A|G|2032
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JCE_059 not in the Motif Atlas
Homologous match to HL_4WF9_047
Geometric discrepancy: 0.1346
The information below is about HL_4WF9_047
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_61996.3
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
7

Unit IDs

3JCE|1|A|G|2027
3JCE|1|A|U|2028
3JCE|1|A|G|2029
3JCE|1|A|A|2030
3JCE|1|A|A|2031
3JCE|1|A|G|2032
3JCE|1|A|A|2033
3JCE|1|A|U|2034
3JCE|1|A|G|2035
3JCE|1|A|C|2036

Current chains

Chain A
23 ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain D
50S ribosomal protein L3
Chain R
50S ribosomal protein L21

Coloring options:


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