HL_3JCE_059

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

3JCE|1|A|A|2030, 3JCE|1|A|A|2031, 3JCE|1|A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCE_059 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1346

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

3JCE|1|A|G|2027
3JCE|1|A|U|2028
3JCE|1|A|G|2029
3JCE|1|A|A|2030
3JCE|1|A|A|2031
3JCE|1|A|G|2032
3JCE|1|A|A|2033
3JCE|1|A|U|2034
3JCE|1|A|G|2035
3JCE|1|A|C|2036

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain R

50S ribosomal protein L21