HL_3JCE_062

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

3JCE|1|A|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCE_062 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1066

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

3JCE|1|A|C|2248
3JCE|1|A|U|2249
3JCE|1|A|G|2250
3JCE|1|A|G|2251
3JCE|1|A|G|2252
3JCE|1|A|G|2253
3JCE|1|A|C|2254
3JCE|1|A|G|2255
3JCE|1|A|G|2256

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27

Chain x

Elongation factor 4