HL_3JCE_128

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

3JCE|1|a|C|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCE_128 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1309

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3JCE|1|a|A|320
3JCE|1|a|A|321
3JCE|1|a|C|322
3JCE|1|a|U|323
3JCE|1|a|G|324
3JCE|1|a|A|325
3JCE|1|a|G|326
3JCE|1|a|A|327
3JCE|1|a|C|328
3JCE|1|a|A|329
3JCE|1|a|C|330
3JCE|1|a|G|331
3JCE|1|a|G|332
3JCE|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20