HL_3JCJ_015

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

3JCJ|1|A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_015 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0997

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

3JCJ|1|A|G|410
3JCJ|1|A|G|411
3JCJ|1|A|A|412
3JCJ|1|A|C|413
3JCJ|1|A|C|414
3JCJ|1|A|A|415
3JCJ|1|A|U|416
3JCJ|1|A|C|417

Current chains

Chain A

23S ribosomal RNA

Nearby chains