3JCJ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3JCJ_107 | 1/0/34:48 | No text annotation | homologous HL_5J7L_215 HL_97756.2 | |
| HL_3JCJ_001 | 1/0/38:44 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_3JCJ_002 | 1/0/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 | |
| HL_3JCJ_003 | 1/A/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
| HL_3JCJ_004 | 1/A/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_3JCJ_005 | 1/A/123:128 | No text annotation | homologous HL_5J7L_136 HL_82710.2 | |
| HL_3JCJ_127 | 1/A/137:142 | No text annotation | homologous HL_5J7L_137 HL_32392.1 | |
| HL_3JCJ_007 | 1/A/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_3JCJ_008 | 1/A/194:201 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
| HL_3JCJ_009 | 1/A/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_3JCJ_010 | 1/A/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
| HL_3JCJ_011 | 1/A/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
| HL_3JCJ_012 | 1/A/319:323 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
| HL_3JCJ_013 | 1/A/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_3JCJ_128 | 1/A/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_3JCJ_015 | 1/A/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
| HL_3JCJ_016 | 1/A/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.7 | |
| HL_3JCJ_017 | 1/A/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
| HL_3JCJ_018 | 1/A/543:550 | No text annotation | homologous HL_7RQB_017 NA | |
| HL_3JCJ_019 | 1/A/566:575 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 HL_28252.7 | |
| HL_3JCJ_020 | 1/A/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_3JCJ_021 | 1/A/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.7 | |
| HL_3JCJ_022 | 1/A/641:647 | No text annotation | homologous HL_5J7L_153 HL_13529.1 | |
| HL_3JCJ_023 | 1/A/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_3JCJ_024 | 1/A/744:753 | No text annotation | homologous HL_4WF9_023 HL_88205.2 | |
| HL_3JCJ_025 | 1/A/779:785 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_3JCJ_026 | 1/A/826:831 | No text annotation | homologous HL_4WF9_025 HL_55195.3 | |
| HL_3JCJ_111 | 1/A/955:962 | GNRA | homologous HL_7A0S_026 HL_37824.7 | |
| HL_3JCJ_029 | 1/A/978:985 | No text annotation | homologous HL_7A0S_027 HL_42998.2 | |
| HL_3JCJ_112 | 1/A/1064:1074 | No text annotation | homologous HL_5J7L_161 HL_19210.3 | |
| HL_3JCJ_031 | 1/A/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_3JCJ_032 | 1/A/1172:1177 | No text annotation | geometric HL_4V88_198 NA | |
| HL_3JCJ_033 | 1/A/1222:1227 | GNRA | homologous HL_5J7L_164 HL_37824.7 | |
| HL_3JCJ_034 | 1/A/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.7 | |
| HL_3JCJ_113 | 1/A/1319:1333 | No text annotation | ||
| HL_3JCJ_035 | 1/A/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_3JCJ_036 | 1/A/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
| HL_3JCJ_037 | 1/A/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_3JCJ_114 | 1/A/1450:1461 | Other HL | geometric HL_5J7L_200 HL_08100.1 | |
| HL_3JCJ_038 | 1/A/1451:1459 | Mini UNCG with extended bulge | homologous HL_5J7L_169 HL_22622.1 | |
| HL_3JCJ_039 | 1/A/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_3JCJ_040 | 1/A/1533:1538 | UNCG | homologous HL_5J7L_171 HL_34617.5 | |
| HL_3JCJ_041 | 1/A/1565:1568 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
| HL_3JCJ_042 | 1/A/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_3JCJ_043 | 1/A/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.7 | |
| HL_3JCJ_044 | 1/A/1691:1696 | UNCG | geometric HL_4PMI_004 HL_34617.5 | |
| HL_3JCJ_116 | 1/A/1726:1734 | No text annotation | geometric HL_7A0S_011 HL_75660.5 | |
| HL_3JCJ_046 | 1/A/1752:1756 | No text annotation | homologous HL_7A0S_044 HL_80709.3 | |
| HL_3JCJ_047 | 1/A/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_3JCJ_048 | 1/A/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_3JCJ_049 | 1/A/1868:1873 | GNRA variation | homologous HL_5J7L_180 HL_37824.7 | |
| HL_3JCJ_050 | 1/A/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_3JCJ_051 | 1/A/1949:1957 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
| HL_3JCJ_052 | 1/A/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_61996.2 | |
| HL_3JCJ_054 | 1/A/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_3JCJ_055 | 1/A/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_3JCJ_056 | 1/A/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_3JCJ_057 | 1/A/2303:2313 | No text annotation | homologous HL_5J7L_188 NA | |
| HL_3JCJ_118 | 1/A/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_3JCJ_059 | 1/A/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.7 | |
| HL_3JCJ_060 | 1/A/2374:2379 | GNRA | homologous HL_4WF9_054 HL_37824.7 | |
| HL_3JCJ_061 | 1/A/2404:2413 | No text annotation | homologous HL_5J7L_192 HL_53454.2 | |
| HL_3JCJ_062 | 1/A/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
| HL_3JCJ_063 | 1/A/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_3JCJ_064 | 1/A/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_3JCJ_065 | 1/A/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_3JCJ_066 | 1/A/2658:2663 | GNRA | homologous HL_5J7L_197 HL_37824.7 | |
| HL_3JCJ_067 | 1/A/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_3JCJ_068 | 1/A/2745:2759 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
| HL_3JCJ_069 | 1/A/2795:2801 | Other HL | homologous HL_5J7L_200 HL_08100.1 | |
| HL_3JCJ_070 | 1/A/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_3JCJ_071 | 1/A/2856:2861 | GNRA | homologous HL_5J7L_202 HL_37824.7 | |
| HL_3JCJ_072 | 1/g/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_3JCJ_129 | 1/g/81:88 | No text annotation | ||
| HL_3JCJ_073 | 1/g/83:86 | No text annotation | ||
| HL_3JCJ_074 | 1/g/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
| HL_3JCJ_075 | 1/g/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.7 | |
| HL_3JCJ_076 | 1/g/203:214 | No text annotation | ||
| HL_3JCJ_077 | 1/g/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_3JCJ_078 | 1/g/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
| HL_3JCJ_079 | 1/g/320:333 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_3JCJ_080 | 1/g/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_3JCJ_081 | 1/g/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.7 | |
| HL_3JCJ_082 | 1/g/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_3JCJ_083 | 1/g/462:470 | GNRA related | homologous HL_5J7L_012 HL_81538.2 | |
| HL_3JCJ_084 | 1/g/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_3JCJ_085 | 1/g/617:623 | No text annotation | homologous HL_5J7L_014 HL_10453.3 | |
| HL_3JCJ_086 | 1/g/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_3JCJ_087 | 1/g/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
| HL_3JCJ_088 | 1/g/786:796 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_3JCJ_089 | 1/g/840:846 | No text annotation | ||
| HL_3JCJ_090 | 1/g/862:867 | GNRA | homologous HL_5J7L_019 HL_37824.7 | |
| HL_3JCJ_091 | 1/g/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_3JCJ_092 | 1/g/963:972 | No text annotation | homologous HL_5J7L_021 HL_50779.4 | |
| HL_3JCJ_093 | 1/g/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_3JCJ_094 | 1/g/1028:1033 | No text annotation | geometric HL_4V88_198 NA | |
| HL_3JCJ_095 | 1/g/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_3JCJ_096 | 1/g/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_3JCJ_097 | 1/g/1134:1140 | No text annotation | homologous HL_5J7L_025 HL_87954.2 | |
| HL_3JCJ_098 | 1/g/1165:1171 | GNRA | homologous HL_5J7L_026 HL_93535.1 | |
| HL_3JCJ_099 | 1/g/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
| HL_3JCJ_100 | 1/g/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
| HL_3JCJ_126 | 1/g/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_3JCJ_102 | 1/g/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_3JCJ_103 | 1/g/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_3JCJ_104 | 1/v/13:22 | No text annotation | homologous HL_3KFU_004 NA | |
| HL_3JCJ_105 | 1/v/31:39 | tRNA anticodon loop | homologous HL_6UFG_007 HL_06059.5 | |
| HL_3JCJ_130 | 1/v/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1FIR_003 HL_28252.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3JCJ_006 | No text annotation | ||
| HL_3JCJ_108 | No text annotation | ||
| HL_3JCJ_109 | No text annotation | ||
| HL_3JCJ_014 | No text annotation | ||
| HL_3JCJ_110 | No text annotation | ||
| HL_3JCJ_027 | No text annotation | ||
| HL_3JCJ_028 | tRNA anticodon loop | ||
| HL_3JCJ_030 | No text annotation | ||
| HL_3JCJ_115 | No text annotation | ||
| HL_3JCJ_045 | tRNA D-loop | ||
| HL_3JCJ_117 | No text annotation | ||
| HL_3JCJ_053 | No text annotation | ||
| HL_3JCJ_058 | No text annotation | ||
| HL_3JCJ_119 | No text annotation | ||
| HL_3JCJ_120 | No text annotation | ||
| HL_3JCJ_121 | No text annotation | ||
| HL_3JCJ_122 | No text annotation | ||
| HL_3JCJ_123 | No text annotation | ||
| HL_3JCJ_124 | No text annotation | ||
| HL_3JCJ_125 | No text annotation | ||
| HL_3JCJ_101 | No text annotation | ||
| HL_3JCJ_106 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3JCJ_001 | 1/0/17:18, 1/0/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.5 | |
| IL_3JCJ_002 | 1/0/23:28, 1/0/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_3JCJ_215 | 1/0/30:31, 1/0/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4WF9_126 IL_68140.4 | |
| IL_3JCJ_171 | 1/0/34:38, 1/0/44:48 | Symmetric double minor groove platform | homologous IL_5J7L_358 IL_58103.11 | |
| IL_3JCJ_005 | 1/0/71:79, 1/0/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 | |
| IL_3JCJ_216 | 1/0/71:80, 1/0/96:105 | No text annotation | ||
| IL_3JCJ_006 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_04021.2 | |
| IL_3JCJ_007 | 1/A/36:37, 1/A/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_3JCJ_008 | 1/A/43:44, 1/A/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.2 | |
| IL_3JCJ_009 | 1/A/81:85, 1/A/97:105 | No text annotation | homologous IL_5J7L_248 IL_37015.1 | |
| IL_3JCJ_010 | 1/A/183:184, 1/A/212:214 | Single stack bend | homologous IL_7A0S_005 IL_90729.1 | |
| IL_3JCJ_011 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_250 IL_04346.10 | |
| IL_3JCJ_012 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_3JCJ_217 | 1/A/269:272, 1/A/365:370 | No text annotation | ||
| IL_3JCJ_014 | 1/A/274:281, 1/A/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_3JCJ_015 | 1/A/293:295, 1/A/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_3JCJ_016 | 1/A/481:484, 1/A/496:509 | No text annotation | homologous IL_7A0S_009 IL_81516.2 | |
| IL_3JCJ_017 | 1/A/536:539, 1/A/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_3JCJ_018 | 1/A/564:566, 1/A/575:577 | Isolated non-canonical cWW pair | homologous IL_5J7L_257 IL_07785.1 | |
| IL_3JCJ_019 | 1/A/606:610, 1/A/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_3JCJ_020 | 1/A/672:674, 1/A/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_3JCJ_021 | 1/A/674:678, 1/A/799:806 | tHW-tHW cross-strand stack | homologous IL_5J7L_260 IL_54041.2 | |
| IL_3JCJ_022 | 1/A/697:698, 1/A/763:765 | Single bulged A | homologous IL_5J7L_261 IL_31462.5 | |
| IL_3JCJ_023 | 1/A/702:703, 1/A/728:730 | Single bulged G | homologous IL_5J7L_262 IL_00225.13 | |
| IL_3JCJ_024 | 1/A/703:707, 1/A/724:728 | Triple sheared | geometric IL_4V9F_027 IL_50730.2 | |
| IL_3JCJ_025 | 1/A/738:740, 1/A/757:758 | Major groove platform | geometric IL_5J7L_264 IL_48076.6 | |
| IL_3JCJ_026 | 1/A/775:777, 1/A/787:791 | Multiple bulged bases | homologous IL_5J7L_265 IL_06549.2 | |
| IL_3JCJ_027 | 1/A/837:838, 1/A/940:942 | Single stack bend | homologous IL_5J7L_266 IL_90729.1 | |
| IL_3JCJ_218 | 1/A/844:847, 1/A/933:934 | Other IL | homologous IL_5J7L_267 IL_90729.1 | |
| IL_3JCJ_219 | 1/A/847:848, 1/A/930:933 | Stack outside cWW | homologous IL_5J7L_268 IL_56987.1 | |
| IL_3JCJ_029 | 1/A/850:851, 1/A/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_3JCJ_030 | 1/A/856:862, 1/A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 IL_29198.2 | |
| IL_3JCJ_220 | 1/A/856:863, 1/A/913:921 | No text annotation | ||
| IL_3JCJ_031 | 1/A/862:863, 1/A/913:915 | Single bulged G | geometric IL_5J7L_271 IL_00225.13 | |
| IL_3JCJ_032 | 1/A/864:868, 1/A/909:912 | C-loop | homologous IL_5J7L_272 IL_26222.2 | |
| IL_3JCJ_033 | 1/A/870:872, 1/A/905:907 | Isolated cWS basepair | homologous IL_4WF9_034 NA | |
| IL_3JCJ_034 | 1/A/875:879, 1/A/898:902 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
| IL_3JCJ_179 | 1/A/879:883, 1/A/893:898 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
| IL_3JCJ_035 | 1/A/880:883, 1/A/893:897 | Isolated non-canonical cWW pair | geometric IL_4E48_001 IL_87907.2 | |
| IL_3JCJ_036 | 1/A/994:996, 1/A/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_3JCJ_037 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_38507.2 | |
| IL_3JCJ_038 | 1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot | homologous IL_5J7L_278 IL_41203.4 | |
| IL_3JCJ_039 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U | geometric IL_5J7L_279 IL_89505.4 | |
| IL_3JCJ_040 | 1/A/1018:1024, 1/A/1140:1144 | Kink-turn related | geometric IL_5J7L_280 IL_57188.5 | |
| IL_3JCJ_041 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_3JCJ_042 | 1/A/1031:1034, 1/A/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_3JCJ_043 | 1/A/1038:1041, 1/A/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_3JCJ_044 | 1/A/1043:1051, 1/A/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_3JCJ_221 | 1/A/1058:1062, 1/A/1076:1080 | No text annotation | ||
| IL_3JCJ_046 | 1/A/1087:1090, 1/A/1101:1102 | No text annotation | homologous IL_6PRV_002 NA | |
| IL_3JCJ_047 | 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 IL_42997.3 | |
| IL_3JCJ_048 | 1/A/1202:1206, 1/A/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_3JCJ_049 | 1/A/1208:1215, 1/A/1234:1238 | Kink-turn | homologous IL_5J7L_288 IL_70923.9 | |
| IL_3JCJ_050 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_3JCJ_051 | 1/A/1319:1323, 1/A/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_3JCJ_052 | 1/A/1351:1355, 1/A/1376:1380 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
| IL_3JCJ_053 | 1/A/1357:1361, 1/A/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_3JCJ_054 | 1/A/1415:1416, 1/A/1582:1587 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
| IL_3JCJ_186 | 1/A/1415:1421, 1/A/1577:1587 | No text annotation | ||
| IL_3JCJ_055 | 1/A/1417:1421, 1/A/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_3JCJ_056 | 1/A/1432:1435, 1/A/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_3JCJ_057 | 1/A/1437:1440, 1/A/1551:1555 | tSH-tHW | homologous IL_5J7L_297 IL_99646.2 | |
| IL_3JCJ_058 | 1/A/1450:1451, 1/A/1459:1461 | Single bulged U | geometric IL_5J7L_298 IL_89505.4 | |
| IL_3JCJ_188 | 1/A/1468:1471, 1/A/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_3JCJ_060 | 1/A/1474:1479, 1/A/1512:1517 | No text annotation | ||
| IL_3JCJ_189 | 1/A/1474:1482, 1/A/1507:1517 | No text annotation | ||
| IL_3JCJ_061 | 1/A/1481:1482, 1/A/1507:1510 | 180 degree turn | homologous IL_5J7L_301 IL_00881.1 | |
| IL_3JCJ_062 | 1/A/1489:1491, 1/A/1499:1500 | Single bulged A | homologous IL_5J7L_302 IL_31462.5 | |
| IL_3JCJ_063 | 1/A/1526:1529, 1/A/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_3JCJ_064 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation | homologous IL_4WF9_062 IL_12566.4 | |
| IL_3JCJ_065 | 1/A/1663:1665, 1/A/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 IL_67095.2 | |
| IL_3JCJ_066 | 1/A/1666:1669, 1/A/1993:1994 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_3JCJ_191 | 1/A/1666:1674, 1/A/1990:1994 | No text annotation | homologous IL_4WF9_117 IL_22854.4 | |
| IL_3JCJ_067 | 1/A/1669:1674, 1/A/1990:1993 | Intercalated tWH | homologous IL_4WF9_065 IL_76758.2 | |
| IL_3JCJ_068 | 1/A/1686:1691, 1/A/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_3JCJ_069 | 1/A/1712:1718, 1/A/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_3JCJ_192 | 1/A/1720:1724, 1/A/1736:1740 | Triple sheared | homologous IL_5J7L_310 IL_50730.2 | |
| IL_3JCJ_071 | 1/A/1770:1771, 1/A/1980:1982 | Single bulged A | homologous IL_4WF9_068 IL_31462.5 | |
| IL_3JCJ_072 | 1/A/1798:1804, 1/A/1813:1821 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
| IL_3JCJ_073 | 1/A/1837:1840, 1/A/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_3JCJ_194 | 1/A/1841:1842, 1/A/1898:1901 | Major groove intercalation | homologous IL_4WF9_071 IL_82107.4 | |
| IL_3JCJ_075 | 1/A/1846:1849, 1/A/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_3JCJ_195 | 1/A/1851:1860, 1/A/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_3JCJ_076 | 1/A/1864:1867, 1/A/1874:1878 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
| IL_3JCJ_077 | 1/A/1933:1934, 1/A/1964:1967 | Bulged stacked bases | homologous IL_4WF9_076 IL_22551.3 | |
| IL_3JCJ_078 | 1/A/1934:1945, 1/A/1961:1964 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_3JCJ_079 | 1/A/2050:2052, 1/A/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_3JCJ_080 | 1/A/2054:2056, 1/A/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_3JCJ_081 | 1/A/2067:2069, 1/A/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_3JCJ_082 | 1/A/2070:2071, 1/A/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_3JCJ_083 | 1/A/2081:2083, 1/A/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.2 | |
| IL_3JCJ_084 | 1/A/2085:2087, 1/A/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 IL_28037.2 | |
| IL_3JCJ_085 | 1/A/2202:2204, 1/A/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_3JCJ_086 | 1/A/2350:2353, 1/A/2364:2367 | Double sheared | homologous IL_5J7L_333 IL_09705.15 | |
| IL_3JCJ_087 | 1/A/2401:2403, 1/A/2414:2415 | No text annotation | ||
| IL_3JCJ_088 | 1/A/2454:2455, 1/A/2496:2498 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_3JCJ_199 | 1/A/2457:2459, 1/A/2493:2494 | Major groove platform | homologous IL_4WF9_091 IL_48076.6 | |
| IL_3JCJ_090 | 1/A/2459:2461, 1/A/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 IL_51387.2 | |
| IL_3JCJ_091 | 1/A/2466:2470, 1/A/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_3JCJ_092 | 1/A/2507:2508, 1/A/2580:2582 | Major groove platform | homologous IL_4WF9_094 IL_07039.3 | |
| IL_3JCJ_093 | 1/A/2510:2512, 1/A/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_4WF9_095 IL_07785.1 | |
| IL_3JCJ_094 | 1/A/2512:2513, 1/A/2571:2574 | No text annotation | geometric IL_4WF9_096 IL_42626.2 | |
| IL_3JCJ_095 | 1/A/2522:2523, 1/A/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_3JCJ_096 | 1/A/2591:2592, 1/A/2601:2603 | Single bulged A | homologous IL_5J7L_344 IL_31462.5 | |
| IL_3JCJ_097 | 1/A/2636:2640, 1/A/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
| IL_3JCJ_098 | 1/A/2652:2658, 1/A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_3JCJ_222 | 1/A/2680:2684, 1/A/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_3JCJ_100 | 1/A/2687:2691, 1/A/2718:2722 | No text annotation | homologous IL_5J7L_348 IL_23774.1 | |
| IL_3JCJ_101 | 1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases | homologous IL_4WF9_103 IL_42626.2 | |
| IL_3JCJ_102 | 1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_3JCJ_103 | 1/A/2806:2811, 1/A/2889:2892 | No text annotation | geometric IL_5J7L_351 IL_29471.1 | |
| IL_3JCJ_104 | 1/A/2838:2839, 1/A/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.5 | |
| IL_3JCJ_105 | 1/A/2843:2846, 1/A/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_3JCJ_106 | 1/A/2847:2852, 1/A/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_3JCJ_107 | 1/g/30:32, 1/g/552:553 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_3JCJ_108 | 1/g/44:45, 1/g/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.5 | |
| IL_3JCJ_109 | 1/g/47:52, 1/g/359:361 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
| IL_3JCJ_110 | 1/g/54:56, 1/g/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.2 | |
| IL_3JCJ_223 | 1/g/63:66, 1/g/103:104 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_3JCJ_112 | 1/g/67:69, 1/g/99:102 | Minor groove platform with extra cWW | geometric IL_5J7L_006 IL_90351.1 | |
| IL_3JCJ_113 | 1/g/70:73, 1/g/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
| IL_3JCJ_114 | 1/g/75:76, 1/g/93:95 | Major groove intercalation | geometric IL_5J7L_352 IL_66635.5 | |
| IL_3JCJ_115 | 1/g/79:82, 1/g/88:90 | No text annotation | ||
| IL_3JCJ_116 | 1/g/82:83, 1/g/86:88 | No text annotation | ||
| IL_3JCJ_117 | 1/g/128:131, 1/g/231:233 | Isolated non-canonical cWW pair | geometric IL_5J7L_009 IL_57744.1 | |
| IL_3JCJ_118 | 1/g/132:136, 1/g/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_3JCJ_119 | 1/g/144:146, 1/g/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.5 | |
| IL_3JCJ_120 | 1/g/147:153, 1/g/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_3JCJ_121 | 1/g/242:247, 1/g/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_3JCJ_224 | 1/g/249:252, 1/g/274:275 | No text annotation | homologous IL_5J7L_015 IL_47074.2 | |
| IL_3JCJ_123 | 1/g/292:293, 1/g/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_3JCJ_124 | 1/g/371:375, 1/g/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_3JCJ_125 | 1/g/375:376, 1/g/387:389 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_3JCJ_126 | 1/g/409:416, 1/g/427:433 | No text annotation | homologous IL_5J7L_020 IL_28026.3 | |
| IL_3JCJ_127 | 1/g/440:442, 1/g/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_3JCJ_128 | 1/g/446:450, 1/g/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 IL_88269.4 | |
| IL_3JCJ_129 | 1/g/450:455, 1/g/477:483 | No text annotation | geometric IL_5J7L_023 IL_70801.1 | |
| IL_3JCJ_130 | 1/g/504:511, 1/g/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_3JCJ_131 | 1/g/515:521, 1/g/528:536 | Kink-turn related | geometric IL_5J7L_025 IL_54177.4 | |
| IL_3JCJ_132 | 1/g/569:575, 1/g/880:881 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_3JCJ_133 | 1/g/580:584, 1/g/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_3JCJ_134 | 1/g/594:596, 1/g/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_3JCJ_135 | 1/g/597:598, 1/g/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_3JCJ_136 | 1/g/605:612, 1/g/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_3JCJ_137 | 1/g/654:655, 1/g/751:754 | Major groove platform; stack outside cWW | geometric IL_5J7L_031 IL_50694.7 | |
| IL_3JCJ_138 | 1/g/658:659, 1/g/746:748 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_3JCJ_139 | 1/g/662:666, 1/g/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_3JCJ_225 | 1/g/673:677, 1/g/713:717 | Triple non-canonical cWW pairs | geometric IL_5J7L_361 IL_49751.4 | |
| IL_3JCJ_140 | 1/g/683:688, 1/g/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_3JCJ_141 | 1/g/774:778, 1/g/804:805 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_3JCJ_142 | 1/g/779:783, 1/g/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_3JCJ_143 | 1/g/887:894, 1/g/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_3JCJ_144 | 1/g/922:923, 1/g/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.5 | |
| IL_3JCJ_145 | 1/g/925:927, 1/g/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_3JCJ_146 | 1/g/933:935, 1/g/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
| IL_3JCJ_147 | 1/g/953:954, 1/g/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_3JCJ_148 | 1/g/993:997, 1/g/1044:1045 | Minor groove platform | homologous IL_5J7L_043 IL_47078.3 | |
| IL_3JCJ_149 | 1/g/998:999, 1/g/1041:1043 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_3JCJ_226 | 1/g/1003:1006, 1/g/1023:1037 | No text annotation | ||
| IL_3JCJ_150 | 1/g/1048:1050, 1/g/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_3JCJ_151 | 1/g/1052:1056, 1/g/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_3JCJ_152 | 1/g/1057:1058, 1/g/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_3JCJ_153 | 1/g/1060:1061, 1/g/1195:1197 | Single bulged A | homologous IL_5J7L_049 IL_31462.5 | |
| IL_3JCJ_154 | 1/g/1061:1063, 1/g/1193:1195 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 IL_28037.2 | |
| IL_3JCJ_155 | 1/g/1124:1128, 1/g/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_3JCJ_212 | 1/g/1124:1129, 1/g/1143:1149 | No text annotation | ||
| IL_3JCJ_156 | 1/g/1129:1132, 1/g/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_3JCJ_157 | 1/g/1158:1161, 1/g/1175:1181 | No text annotation | homologous IL_4LFB_050 IL_42032.1 | |
| IL_3JCJ_213 | 1/g/1247:1253, 1/g/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_3JCJ_159 | 1/g/1255:1258, 1/g/1277:1282 | 180 degree turn | homologous IL_5J7L_055 IL_11344.2 | |
| IL_3JCJ_214 | 1/g/1255:1263, 1/g/1272:1282 | No text annotation | ||
| IL_3JCJ_160 | 1/g/1259:1263, 1/g/1272:1276 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_3JCJ_161 | 1/g/1303:1308, 1/g/1329:1334 | No text annotation | geometric IL_5J7L_057 IL_85536.2 | |
| IL_3JCJ_162 | 1/g/1399:1401, 1/g/1501:1504 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
| IL_3JCJ_163 | 1/g/1401:1404, 1/g/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_3JCJ_164 | 1/g/1405:1407, 1/g/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_3JCJ_165 | 1/g/1407:1409, 1/g/1491:1494 | Isolated non-canonical cWW pair | geometric IL_5J7L_009 IL_57744.1 | |
| IL_3JCJ_227 | 1/g/1412:1414, 1/g/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_3JCJ_167 | 1/g/1416:1419, 1/g/1481:1484 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_3JCJ_168 | 1/g/1430:1435, 1/g/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_3JCJ_169 | 1/g/1440:1442, 1/g/1460:1461 | Single bulged A | homologous IL_5J7L_064 IL_31462.5 | |
| IL_3JCJ_170 | 1/g/1445:1448, 1/g/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3JCJ_003 | No text annotation | ||
| IL_3JCJ_004 | No text annotation | ||
| IL_3JCJ_172 | No text annotation | ||
| IL_3JCJ_173 | Minor groove platform with extra cWW | ||
| IL_3JCJ_174 | No text annotation | ||
| IL_3JCJ_013 | No text annotation | ||
| IL_3JCJ_175 | No text annotation | ||
| IL_3JCJ_176 | No text annotation | ||
| IL_3JCJ_028 | No text annotation | ||
| IL_3JCJ_177 | No text annotation | ||
| IL_3JCJ_178 | Triple sheared with non-canonical cWW | ||
| IL_3JCJ_180 | Isolated non-canonical cWW pair | ||
| IL_3JCJ_181 | Isolated non-canonical cWW pair | ||
| IL_3JCJ_182 | Tandem non-canonical cWW pairs | ||
| IL_3JCJ_045 | No text annotation | ||
| IL_3JCJ_183 | No text annotation | ||
| IL_3JCJ_184 | No text annotation | ||
| IL_3JCJ_185 | tSH-tHW-tHS-cWW | ||
| IL_3JCJ_187 | tSH-tHW-tHS | ||
| IL_3JCJ_059 | tSH-tHH-tHS | ||
| IL_3JCJ_190 | No text annotation | ||
| IL_3JCJ_070 | Triple sheared with non-canonical cWW | ||
| IL_3JCJ_193 | Isolated non-canonical cWW pair | ||
| IL_3JCJ_074 | Isolated non-canonical cWW with bulges | ||
| IL_3JCJ_196 | No text annotation | ||
| IL_3JCJ_197 | No text annotation | ||
| IL_3JCJ_198 | No text annotation | ||
| IL_3JCJ_089 | Major groove platform with extra pair | ||
| IL_3JCJ_200 | No text annotation | ||
| IL_3JCJ_099 | No text annotation | ||
| IL_3JCJ_201 | No text annotation | ||
| IL_3JCJ_111 | Isolated non-canonical cWW pair | ||
| IL_3JCJ_202 | No text annotation | ||
| IL_3JCJ_203 | No text annotation | ||
| IL_3JCJ_204 | No text annotation | ||
| IL_3JCJ_205 | No text annotation | ||
| IL_3JCJ_206 | No text annotation | ||
| IL_3JCJ_122 | No text annotation | ||
| IL_3JCJ_207 | No text annotation | ||
| IL_3JCJ_208 | Isolated non-canonical cWW pair | ||
| IL_3JCJ_209 | No text annotation | ||
| IL_3JCJ_210 | No text annotation | ||
| IL_3JCJ_211 | No text annotation | ||
| IL_3JCJ_158 | No text annotation | ||
| IL_3JCJ_166 | Tandem non-canonical cWW pairs |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3JCJ_001 | 1/0/10:16, 1/0/68:70, 1/0/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
| J3_3JCJ_002 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_3JCJ_027 | 1/A/30:31, 1/A/474:484, 1/A/496:510 | No text annotation | homologous J3_5J7L_066 J3_92134.2 | |
| J3_3JCJ_028 | 1/A/32:35, 1/A/445:461, 1/A/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_3JCJ_040 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_3JCJ_029 | 1/A/683:689, 1/A/773:775, 1/A/791:794 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_3JCJ_005 | 1/A/698:700, 1/A/732:736, 1/A/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_3JCJ_006 | 1/A/1055:1057, 1/A/1081:1087, 1/A/1102:1104 | No text annotation | homologous J3_5J7L_040 J3_28621.5 | |
| J3_3JCJ_007 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation | homologous J3_7A0S_006 J3_32852.6 | |
| J3_3JCJ_008 | 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
| J3_3JCJ_009 | 1/A/1344:1349, 1/A/1382:1385, 1/A/1402:1403 | No text annotation | homologous J3_5J7L_043 J3_92705.1 | |
| J3_3JCJ_031 | 1/A/1344:1355, 1/A/1376:1385, 1/A/1402:1403 | No text annotation | ||
| J3_3JCJ_032 | 1/A/1424:1429, 1/A/1564:1565, 1/A/1568:1574 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_3JCJ_010 | 1/A/2091:2093, 1/A/2196:2200, 1/A/2223:2228 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
| J3_3JCJ_033 | 1/A/2282:2284, 1/A/2384:2395, 1/A/2421:2427 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_3JCJ_011 | 1/A/2295:2299, 1/A/2317:2323, 1/A/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_3JCJ_041 | 1/A/2517:2520, 1/A/2545:2547, 1/A/2561:2567 | No text annotation | homologous J3_5J7L_046 J3_32601.5 | |
| J3_3JCJ_013 | 1/A/2789:2791, 1/A/2805:2806, 1/A/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_3JCJ_014 | 1/A/2812:2815, 1/A/2831:2836, 1/A/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J3_3JCJ_015 | 1/g/46:47, 1/g/361:369, 1/g/392:395 | No text annotation | ||
| J3_3JCJ_034 | 1/g/46:52, 1/g/359:369, 1/g/392:395 | No text annotation | ||
| J3_3JCJ_016 | 1/g/586:588, 1/g/651:654, 1/g/754:755 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
| J3_3JCJ_035 | 1/g/586:588, 1/g/651:655, 1/g/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_3JCJ_042 | 1/g/672:673, 1/g/717:725, 1/g/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_3JCJ_017 | 1/g/826:829, 1/g/857:861, 1/g/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_3JCJ_018 | 1/g/936:939, 1/g/1344:1350, 1/g/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_3JCJ_019 | 1/g/943:946, 1/g/1235:1237, 1/g/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_3JCJ_020 | 1/g/955:962, 1/g/973:984, 1/g/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
| J3_3JCJ_021 | 1/g/990:993, 1/g/1045:1047, 1/g/1210:1215 | No text annotation | homologous J3_5J7L_007 J3_82572.1 | |
| J3_3JCJ_037 | 1/g/990:997, 1/g/1044:1047, 1/g/1210:1215 | No text annotation | homologous J3_5J7L_053 J3_76475.2 | |
| J3_3JCJ_022 | 1/g/1002:1006, 1/g/1023:1028, 1/g/1033:1038 | No text annotation | ||
| J3_3JCJ_023 | 1/g/1063:1068, 1/g/1107:1113, 1/g/1187:1193 | No text annotation | geometric J3_5J7L_008 J3_08394.3 | |
| J3_3JCJ_024 | 1/g/1073:1074, 1/g/1083:1087, 1/g/1098:1102 | No text annotation | homologous J3_5J7L_009 J3_76043.3 | |
| J3_3JCJ_025 | 1/g/1116:1118, 1/g/1155:1158, 1/g/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_3JCJ_039 | 1/g/1116:1118, 1/g/1155:1161, 1/g/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_3JCJ_026 | 1/g/1237:1241, 1/g/1296:1303, 1/g/1334:1337 | No text annotation | homologous J3_5J7L_011 J3_37047.6 | |
| J4_3JCJ_001 | 1/A/268:269, 1/A/370:375, 1/A/399:406, 1/A/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_3JCJ_002 | 1/A/297:301, 1/A/316:319, 1/A/323:325, 1/A/337:341 | No text annotation | homologous J4_5J7L_019 J4_71729.5 | |
| J4_3JCJ_003 | 1/A/601:604, 1/A/624:628, 1/A/635:638, 1/A/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_3JCJ_004 | 1/A/1270:1276, 1/A/1294:1295, 1/A/1645:1648, 1/A/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_3JCJ_015 | 1/A/1310:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_3JCJ_006 | 1/A/1444:1445, 1/A/1466:1467, 1/A/1525:1526, 1/A/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_3JCJ_007 | 1/A/1772:1776, 1/A/1788:1792, 1/A/1827:1830, 1/A/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_3JCJ_008 | 1/A/1833:1835, 1/A/1905:1906, 1/A/1924:1933, 1/A/1967:1972 | No text annotation | homologous J4_5J7L_026 J4_93343.1 | |
| J4_3JCJ_016 | 1/A/2285:2289, 1/A/2343:2347, 1/A/2370:2372, 1/A/2381:2383 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
| J4_3JCJ_017 | 1/A/2643:2646, 1/A/2674:2676, 1/A/2731:2735, 1/A/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J4_3JCJ_011 | 1/g/115:122, 1/g/239:240, 1/g/286:289, 1/g/311:312 | No text annotation | homologous J4_5J7L_001 J4_35578.3 | |
| J4_3JCJ_018 | 1/g/142:144, 1/g/178:184, 1/g/193:198, 1/g/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
| J4_3JCJ_013 | 1/g/575:577, 1/g/764:769, 1/g/810:821, 1/g/879:880 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
| J4_3JCJ_014 | 1/v/7:10, 1/v/25:27, 1/v/43:49, 1/v/65:66 | tRNA junction | homologous J4_3WQY_001 J4_70449.27 | |
| J5_3JCJ_001 | 1/A/531:533, 1/A/560:564, 1/A/577:579, 1/A/1261:1262, 1/A/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_3JCJ_002 | 1/A/584:589, 1/A/668:671, 1/A/809:812, 1/A/1195:1196, 1/A/1250:1256 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_3JCJ_003 | 1/A/1674:1682, 1/A/1706:1707, 1/A/1751:1752, 1/A/1756:1764, 1/A/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_3JCJ_009 | 1/A/2057:2064, 1/A/2446:2454, 1/A/2498:2506, 1/A/2583:2588, 1/A/2606:2611 | No text annotation | ||
| J5_3JCJ_010 | 1/A/2074:2077, 1/A/2243:2246, 1/A/2258:2259, 1/A/2281:2282, 1/A/2427:2435 | No text annotation | homologous J5_7A0S_007 J5_39529.1 | |
| J5_3JCJ_006 | 1/g/36:39, 1/g/403:406, 1/g/436:440, 1/g/497:500, 1/g/545:548 | No text annotation | homologous J5_5J7L_001 J5_92941.1 | |
| J5_3JCJ_007 | 1/g/36:39, 1/g/403:406, 1/g/436:442, 1/g/492:500, 1/g/545:548 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
| J5_3JCJ_008 | 1/g/58:61, 1/g/106:113, 1/g/314:316, 1/g/337:339, 1/g/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J6_3JCJ_001 | 1/A/2073:2077, 1/A/2243:2246, 1/A/2258:2259, 1/A/2281:2284, 1/A/2384:2395, 1/A/2421:2436 | No text annotation | ||
| J6_3JCJ_002 | 1/A/2074:2077, 1/A/2243:2246, 1/A/2258:2259, 1/A/2281:2284, 1/A/2384:2395, 1/A/2421:2435 | No text annotation | ||
| J7_3JCJ_001 | 1/A/8:15, 1/A/525:531, 1/A/2018:2023, 1/A/2040:2043, 1/A/2625:2630, 1/A/2788:2789, 1/A/2894:2895 | No text annotation | ||
| J7_3JCJ_002 | 1/A/817:822, 1/A/835:838, 1/A/940:946, 1/A/971:976, 1/A/987:991, 1/A/1163:1164, 1/A/1185:1190 | No text annotation | ||
| J9_3JCJ_002 | 1/A/45:54, 1/A/116:121, 1/A/130:131, 1/A/148:150, 1/A/176:184, 1/A/212:224, 1/A/231:235, 1/A/262:266, 1/A/426:433 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3JCJ_003 | No text annotation | ||
| J3_3JCJ_004 | No text annotation | ||
| J3_3JCJ_030 | No text annotation | ||
| J3_3JCJ_012 | No text annotation | ||
| J3_3JCJ_036 | No text annotation | ||
| J3_3JCJ_038 | No text annotation | ||
| J4_3JCJ_005 | No text annotation | ||
| J4_3JCJ_009 | No text annotation | ||
| J4_3JCJ_010 | No text annotation | ||
| J4_3JCJ_012 | No text annotation | ||
| J5_3JCJ_004 | No text annotation | ||
| J5_3JCJ_005 | No text annotation | ||
| J9_3JCJ_001 | No text annotation |
Coloring options: