HL_3JCJ_025

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

3JCJ|1|A|A|781, 3JCJ|1|A|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_025 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2684

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

3JCJ|1|A|U|779
3JCJ|1|A|G|780
3JCJ|1|A|A|781
3JCJ|1|A|A|782
3JCJ|1|A|A|783
3JCJ|1|A|G|784
3JCJ|1|A|G|785

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2