HL_3JCJ_052

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

3JCJ|1|A|A|2030, 3JCJ|1|A|A|2031, 3JCJ|1|A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_052 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1513

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

3JCJ|1|A|G|2027
3JCJ|1|A|U|2028
3JCJ|1|A|G|2029
3JCJ|1|A|A|2030
3JCJ|1|A|A|2031
3JCJ|1|A|G|2032
3JCJ|1|A|A|2033
3JCJ|1|A|U|2034
3JCJ|1|A|G|2035
3JCJ|1|A|C|2036

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L3

Chain Q

50S ribosomal protein L21

Chain Z

50S ribosomal protein L32