3D structure

PDB id
3JCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CUGGGGCGG
Length
9 nucleotides
Bulged bases
3JCJ|1|A|G|2250
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JCJ_055 not in the Motif Atlas
Homologous match to HL_7RQB_053
Geometric discrepancy: 0.1009
The information below is about HL_7RQB_053
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JCJ|1|A|C|2248
3JCJ|1|A|U|2249
3JCJ|1|A|G|2250
3JCJ|1|A|G|2251
3JCJ|1|A|G|2252
3JCJ|1|A|G|2253
3JCJ|1|A|C|2254
3JCJ|1|A|G|2255
3JCJ|1|A|G|2256

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain L
50S ribosomal protein L16
Chain V
50S ribosomal protein L27
Chain f
Translation initiation factor IF-2
Chain v
Transfer RNA; tRNA

Coloring options:


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