HL_3JCJ_069

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

3JCJ|1|A|U|2797, 3JCJ|1|A|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_069 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.2759

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

3JCJ|1|A|C|2795
3JCJ|1|A|U|2796
3JCJ|1|A|U|2797
3JCJ|1|A|U|2798
3JCJ|1|A|A|2799
3JCJ|1|A|A|2800
3JCJ|1|A|G|2801

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L13