HL_3JCJ_083

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

3JCJ|1|g|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_083 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1726

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

3JCJ|1|g|G|462
3JCJ|1|g|U|463
3JCJ|1|g|U|464
3JCJ|1|g|A|465
3JCJ|1|g|A|466
3JCJ|1|g|U|467
3JCJ|1|g|A|468
3JCJ|1|g|C|469
3JCJ|1|g|C|470

Current chains

Chain g

16S ribosomal RNA

Nearby chains